 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Gh_A04G0563 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 224aa MW: 26326.1 Da PI: 9.585 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gh_A04G0563 | genome | NAU-NBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 50.3 | 4e-16 | 61 | 114 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k+ ++t+eqle Le F+++ +++ +++ +L+++lg + rq+ vWFqNrRa++k
Gh_A04G0563 61 KKKRLTNEQLEWLEMSFQEDIKLDPRRKMKLSRELGRQPRQIAVWFQNRRARWK 114
56679************************************************9 PP
|
| 2 | HD-ZIP_I/II | 104.5 | 8.7e-34 | 60 | 152 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93
ekk+rl++eq++ LE+sF+e+ kL+p+rK++l+reLg qprq+avWFqnrRAR+k+k+lE+ ++aL++++ +++e+++L++ev++L++ l+e
Gh_A04G0563 60 EKKKRLTNEQLEWLEMSFQEDIKLDPRRKMKLSRELGRQPRQIAVWFQNRRARWKAKELERLCNALQHHLHLVSKETQKLQHEVSKLKAMLRE 152
69**************************************************************************************98875 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 224 aa
Download sequence Send
to blast |
MEWNGTLSFV PGQPPSLTSL YNYNYDQYFP GMEMMNVGLA EAAAMEKKKK KKKIYMNNEE 60
KKKRLTNEQL EWLEMSFQED IKLDPRRKMK LSRELGRQPR QIAVWFQNRR ARWKAKELER 120
LCNALQHHLH LVSKETQKLQ HEVSKLKAML REQPTRNQVS TGYTEISGEE TIESTLIHCS 180
NKYMVVPNNH HPIADQCSYL FNVDKNNPNP VGSTYWGEQL PTNP
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 46 | 52 | KKKKKKK |
| 2 | 46 | 63 | KKKKKKKIYMNNEEKKKR |
| 3 | 49 | 63 | KKKKIYMNNEEKKKR |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | JX614786 | 0.0 | JX614786.1 Gossypium hirsutum clone NBRI_GE58425 microsatellite sequence. |
