PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A04G0196
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 577aa    MW: 64038.4 Da    PI: 6.2034
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A04G0196genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS421.85.7e-1292045731373
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l++lL++cA+ +s+++  + + l+a+ +  +s +g+p+qRl ay++e+L ar   s+s++y+al+++e +    ++ l+++++++e++P+lkf++++a
  Gh_A04G0196 204 LKQLLIACAKTLSENNIDKFNMLIAKARVAVSIYGEPIQRLGAYMVEGLVARKEASGSNIYRALRCQEPE---GKDLLTYMHTLYEICPYLKFGYMAA 298
                  689******************************************************************9...9************************ PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                  N aI ea  +e+r+HiiDf+i qG+QW++LlqaLa+Rp+g+p +RiTg+++p s+  +   le++++rL  + e++gvp+ef+  +    +d++ ++L
  Gh_A04G0196 299 NGAIAEACRTEDRIHIIDFQIAQGTQWVTLLQALAARPGGAPYVRITGIDDPVSKyaRGGGLEAVERRLMALSEQFGVPVEFHG-MPVFAADITRDML 395
                  ****************************************************99999999************************.6888999****** PP

         GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                  +vkpgEalaVn+ lqlh+++desv+++++rd +L++v+slsPkv+++veqe+++n+++Fl rf+e+leyy a+f+s+++++pr+ +eri+vE+++l+r
  Gh_A04G0196 396 DVKPGEALAVNFPLQLHHTPDESVDVNNPRDGILRMVRSLSPKVITLVEQESNTNTAPFLSRFIETLEYYLAMFESIDETMPRHRRERINVEQHCLAR 493
                  ************************************************************************************************** PP

         GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                  ++vnv+aceg+er+erhe ++kW++rl++aGF+p+pls+++++ ++ ll+ ++ + y++ e++g+++lgWkdr+L+s+SaW
  Gh_A04G0196 494 DVVNVIACEGKERVERHELFGKWKSRLTMAGFRPYPLSSYVNSVIRGLLKCYS-KHYTLVEKDGAMLLGWKDRNLISASAW 573
                  *************************************************9999.55************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.856178555IPR005202Transcription factor GRAS
PfamPF035142.0E-126204573IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    Send to blast
MDSRLCRYGV ISAGLSYSTS YSDVPSVPNS LFSSLKSNIG NSPISSFSIQ PDCDTNIALS  60
DSQEQYNSTE NLSGYASCNS SLESSTYFHQ SSPSVDCRRE SLLIHSDGTS YIEDANSSHE  120
IVYTSQELGT AVMAPDGANE VTNTPQTNGQ RYRASSKDCR GSSMCQPQTT FVSNRRQSTE  180
AAHVEKRLTA IEDLSLQSIP PGNLKQLLIA CAKTLSENNI DKFNMLIAKA RVAVSIYGEP  240
IQRLGAYMVE GLVARKEASG SNIYRALRCQ EPEGKDLLTY MHTLYEICPY LKFGYMAANG  300
AIAEACRTED RIHIIDFQIA QGTQWVTLLQ ALAARPGGAP YVRITGIDDP VSKYARGGGL  360
EAVERRLMAL SEQFGVPVEF HGMPVFAADI TRDMLDVKPG EALAVNFPLQ LHHTPDESVD  420
VNNPRDGILR MVRSLSPKVI TLVEQESNTN TAPFLSRFIE TLEYYLAMFE SIDETMPRHR  480
RERINVEQHC LARDVVNVIA CEGKERVERH ELFGKWKSRL TMAGFRPYPL SSYVNSVIRG  540
LLKCYSKHYT LVEKDGAMLL GWKDRNLISA SAWCCDG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-6222757326374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.103290.0boll| leaf| ovule| stem
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016728495.10.0PREDICTED: scarecrow-like protein 21
RefseqXP_016728496.10.0PREDICTED: scarecrow-like protein 21
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A1U8MNS40.0A0A1U8MNS4_GOSHI; scarecrow-like protein 21
STRINGGorai.009G427800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM145381022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.11e-177scarecrow-like 5
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]