PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A04G0016
Common NameMYB80-2
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 336aa    MW: 37467 Da    PI: 7.7639
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A04G0016genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.11e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg WT+eEd +l  +++q+G+++W++I++  g+ R++k+c++rw +yl
      Gh_A04G0016 14 RGQWTPEEDNKLSSYIAQHGTRNWRLIPKNAGLQRCGKSCRLRWTNYL 61
                     89********************************************97 PP
2Myb_DNA-binding45.32e-1468110246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g ++  E++ +v+++   G++ W++Ia+ ++ gRt++++k++w++
      Gh_A04G0016  68 GQFSDAEEQTIVKLHSVVGNR-WSLIAAQLP-GRTDNDVKNHWNT 110
                      7899*****************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.0E-25564IPR009057Homeodomain-like
PROSITE profilePS5129426.617965IPR017930Myb domain
SuperFamilySSF466894.77E-2911108IPR009057Homeodomain-like
SMARTSM007176.0E-141363IPR001005SANT/Myb domain
PfamPF002493.3E-171461IPR001005SANT/Myb domain
CDDcd001673.55E-121761No hitNo description
Gene3DG3DSA:1.10.10.604.9E-2465116IPR009057Homeodomain-like
SMARTSM007174.5E-1366114IPR001005SANT/Myb domain
PROSITE profilePS5129420.76266116IPR017930Myb domain
PfamPF002499.6E-1368110IPR001005SANT/Myb domain
CDDcd001671.26E-970112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MGRIPCCEKD NVKRGQWTPE EDNKLSSYIA QHGTRNWRLI PKNAGLQRCG KSCRLRWTNY  60
LRPDLKHGQF SDAEEQTIVK LHSVVGNRWS LIAAQLPGRT DNDVKNHWNT KLKKKLSGTG  120
IDPVTHKPFS HLMAEIATTL APPQVAHLAE AALGCFKDEM LHLLTKKRID FQLQQSNPGQ  180
GNNTTVPYSK QDEKDDTVEK IKLNLSRAIQ EPDMLPLNKP WESTSTRATS ANFEGGCGVF  240
PTSVTGYHHY GPSSFANEGG GSGSPWSQSM CTGSTCTAGE QVRSHEKLKD ENGEEFQGGK  300
EIKNATSIFN TDCVLWDIPS DDLINPIYRE AFNNKE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-27141167108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in developing anthers during meiosis and young microspore stages. {ECO:0000269|PubMed:16141453}.
Functional Description ? help Back to Top
Source Description
UniProtEssential for tapetum development in anthers and microsporogenesis. May regulate the timing of tapetal programmed cell death (PCD) which is critical for pollen development. {ECO:0000269|PubMed:22086333}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6757070.0KM675707.1 Gossypium hirsutum MYB80-2 (MYB80-2) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017647766.10.0PREDICTED: transcription factor MYB80
SwissprotQ7XQN11e-123MYB80_ORYSJ; Transcription factor MYB80
TrEMBLA0A097IWS10.0A0A097IWS1_GOSHI; MYB80-2
STRINGGorai.009G454000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM100052635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56110.11e-118myb domain protein 103
Publications ? help Back to Top
  1. Xu Y,Iacuone S,Li SF,Parish RW
    MYB80 homologues in Arabidopsis, cotton and Brassica: regulation and functional conservation in tapetal and pollen development.
    BMC Plant Biol., 2014. 14: p. 278
    [PMID:25311582]