PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A03G1696
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 349aa    MW: 40344.1 Da    PI: 9.0794
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A03G1696genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.51.6e-15595197
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                 ff +l+ s +l+ + l++p +f++++  +   s+   l+ ++g +W+v +  +k +++ ++++GW+eFv+   + +g f++F+++g+s f   v++f
  Gh_A03G1696  5 FFHKLILSTTLQDRKLRIPDNFIKKFRDE--LSVAAALTVPDGHVWRVGI--KKVDNKAWFKEGWQEFVERYYISVGYFLIFRYEGNSAF--SVSIF 95
                 788999999**************999755..999****************..99999*****************************9999..88887 PP
2B362.66.5e-20247337498
                  E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  vl ps+  + ++++lp  fae+h +g++     ++l+ ++gr+W v++ yr+++    +++GW eF  +n+L egD++vF+l +++ef l+v+vfr
  Gh_A03G1696 247 VLRPSYLYRGCIMYLPSCFAEQHlSGVSG---FIKLQLPDGRQWPVRCLYRGGR--AKFSQGWYEFTLENNLGEGDVCVFELLRSREFVLKVTVFR 337
                  78899******************866743...5***************666665..5699**********************999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.7E-21396IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-20396IPR015300DNA-binding pseudobarrel domain
CDDcd100171.87E-16596No hitNo description
PROSITE profilePS5086313.267598IPR003340B3 DNA binding domain
PfamPF023621.5E-12595IPR003340B3 DNA binding domain
SMARTSM010193.5E-13698IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.4E-25236337IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-25237337IPR015300DNA-binding pseudobarrel domain
CDDcd100173.16E-23242337No hitNo description
SMARTSM010191.0E-22244339IPR003340B3 DNA binding domain
PROSITE profilePS5086313.648244339IPR003340B3 DNA binding domain
PfamPF023628.2E-18247337IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MPRPFFHKLI LSTTLQDRKL RIPDNFIKKF RDELSVAAAL TVPDGHVWRV GIKKVDNKAW  60
FKEGWQEFVE RYYISVGYFL IFRYEGNSAF SVSIFNLYNS EINYQTNALV GNQYNLGRQY  120
PFEELEDDEC VSPALPNLFG GSKLNCINWS GEVNHHAPKG VNNQPIRVKL HSSGAELPKL  180
KKPGRKKQKF EPSEEDSSLG HEDDMEMRNR FYESASARKR IVTAEERERA INAAKAFEPT  240
NPFCRVVLRP SYLYRGCIMY LPSCFAEQHL SGVSGFIKLQ LPDGRQWPVR CLYRGGRAKF  300
SQGWYEFTLE NNLGEGDVCV FELLRSREFV LKVTVFRVME SAGLMYRSQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A3e-7621034015144B3 domain-containing transcription factor VRN1
4i1k_B3e-7621034015144B3 domain-containing transcription factor VRN1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.192390.0boll
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and at lower levels in aerial parts. {ECO:0000269|PubMed:12114624}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016714599.10.0PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1
RefseqXP_017631907.10.0PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1
SwissprotQ8L3W11e-153VRN1_ARATH; B3 domain-containing transcription factor VRN1
TrEMBLA0A1U8LN370.0A0A1U8LN37_GOSHI; B3 domain-containing transcription factor VRN1 isoform X1
STRINGGorai.005G240900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM112428103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-149B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Kumar A,Singh A,Panigrahy M,Sahoo PK,Panigrahi KCS
    Carbon nanoparticles influence photomorphogenesis and flowering time in Arabidopsis thaliana.
    Plant Cell Rep., 2018. 37(6): p. 901-912
    [PMID:29541883]