PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A03G1674
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 332aa    MW: 38294.7 Da    PI: 8.0222
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A03G1674genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.11.4e-17104187190
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                  ffk+++ps v +  +++lpk+f++ + ++ + + t++l  e+g+++++++ +++k     l++GWk+F k++gL +gD +vF+l++ s+f
  Gh_A03G1674 104 FFKIMIPSVVCRGFWMSLPKEFCQLN-LP-NHDATVILVGETGKEYRINFLVQRKA----LSGGWKRFSKEHGLLVGDALVFHLIRPSKF 187
                  99*********************666.44.45679***************655555....9***********************987776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-1897188IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-21100188IPR015300DNA-binding pseudobarrel domain
CDDcd100171.33E-22102188No hitNo description
PROSITE profilePS5086312.182104195IPR003340B3 DNA binding domain
SMARTSM010199.5E-18104193IPR003340B3 DNA binding domain
PfamPF023626.6E-15104187IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MMMNTNMKIK IEEEEEELFD DEGNDRLPIS QLFQLLQQRQ SISMQENIHD CLQKASRKRP  60
RDKNYNDHVV KGTKRVSEQD FAKSPVIERA EQVQANLSAE FPSFFKIMIP SVVCRGFWMS  120
LPKEFCQLNL PNHDATVILV GETGKEYRIN FLVQRKALSG GWKRFSKEHG LLVGDALVFH  180
LIRPSKFKGS RKPVREWHFG CWSTEVEGIR FTKTVSIADA IRASEISTPR SGFVPWDNAL  240
NSFDFLGTDV GSLHKRVHHV LNHTFESKQE LKLKYKEAKL ERAYAEQETK SLESDLSGKK  300
EEMQRLDAEI DALTVNAKRY ELMFEAAANA PW
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012480251.11e-119PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X1
TrEMBLA0A2P5WL381e-158A0A2P5WL38_GOSBA; Uncharacterized protein
STRINGGorai.005G238700.11e-119(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2226845
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-27B3 family protein