PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A03G1629
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HB-PHD
Protein Properties Length: 940aa    MW: 103503 Da    PI: 4.6515
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A03G1629genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox36.11.1e-11867910952
                  HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
     Homeobox   9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 
                  +++ ++L e F++n+yp+++++e+L k+l++t rqV+ WF N R
  Gh_A03G1629 867 ETEKQRLCESFRENQYPDRATKERLGKELDMTFRQVSKWFENAR 910
                  567899************************************99 PP
2PHD39.21.6e-13502556150
                  SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHT CS
          PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCke 50 
                  +C+ Cg+    ++++++lCdg C++ fH++Cl+++l +e++p g   wlC+ C +
  Gh_A03G1629 502 FCAKCGSkdLSANNDIILCDGvCDRGFHQYCLQPPLLKEDIPPGdeGWLCPGCYC 556
                  699***977677********77********************9999*******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579039.97E-15492560IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.102.3E-13499555IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.941500557IPR019787Zinc finger, PHD-finger
PfamPF006283.8E-11502556IPR019787Zinc finger, PHD-finger
SMARTSM002499.1E-10502555IPR001965Zinc finger, PHD-type
CDDcd155042.01E-26502554No hitNo description
PROSITE patternPS013590503554IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.606.5E-13845910IPR009057Homeodomain-like
PROSITE profilePS5007111.953856916IPR001356Homeobox domain
SuperFamilySSF466895.99E-11859913IPR009057Homeodomain-like
SMARTSM003891.3E-7859920IPR001356Homeobox domain
CDDcd000864.44E-10863910No hitNo description
PfamPF000463.6E-9867910IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 940 aa     Download sequence    Send to blast
MLIFFIVSFL PDMINVEHMG VSPPETKSEK GNHFAPEETT SEQAHELGSE YLHTELSENK  60
HPCGYARTRN ESAETATGVS CSDIHESSSG YVDKNSPPEH LGLLPKYASE HNPPDNSFCH  120
QETVSGMTHE YGSGYVHETS EKKHQPGSDI VQNNLEEACT LVCGLPAEHL RPCSEEFSKN  180
TLTERLGVLP EDSSKCTQID QLSCPQLGSV EPTAAFGSIN TSKELGEPTE QQQQLGSESL  240
SNGIVKSPTA TSHNAFYQAL ELNPEVMNQS NCGQRLQSPS EGASIVSQIG KSYLVEPLGL  300
PPGFESGNSC VQQPKLHSED MAQSSGVEQH EATPKNFLEN SVQGRDGESS KTRKKYTPRP  360
LSSSDRVLRS KSQEKSKASE LSNNITDIGS SEQQKGKNRN KMIEKREVSD EYSRIRSHLR  420
YLVNRINYER SLIAAYSTEG WKGLSLEKLK PEKELQRATS EILRRKLKIR DLFQRIDSLC  480
AEGRLPESLF DSKGEIDSED IFCAKCGSKD LSANNDIILC DGVCDRGFHQ YCLQPPLLKE  540
DIPPGDEGWL CPGCYCKLFC IELVNESQGA SFCLADSWEK VFPEAVVAAG GQNQDPNLEL  600
PSDDSDDSDY NADNSEPDEK DQGDESSSDE SDFTCSSEEL EVPRNVDPCL GLLSDDSEDD  660
DYDPDGPDHD NVAEPESSTS DFTSDSEDLG AMLKVNSSSP KDEVPVSNIG STDSKGQKPK  720
LGGNESRSDE PSSIMDSASG QDGTAVSKKR SSEKLDYKKL YDETYVNFPS SSSDDEDWSD  780
TIAPRKRKRC AAGASSAPEN GNASSSRSLS ISEGSKLNPE HKLRRNMRHN SNFKDTNLSP  840
AELKGGTSGS GSSDKKAGSS THRRLGETEK QRLCESFREN QYPDRATKER LGKELDMTFR  900
QVSKWFENAR WSFNHPTSNQ ETAAKRFAEN AIASAFPKKN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.151560.0boll
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Primarily detected in root tissue.
Functional Description ? help Back to Top
Source Description
UniProtBinds only to large DNA fragments. Recognizes a DNA fragment carrying 8 copies of box7 motif of the light-induced cab-E promoter of Nicotiana plumbaginifolia. Also recognizes the box7m1 motif.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017643002.10.0PREDICTED: homeobox protein HAT3.1-like
SwissprotQ049961e-135HAT31_ARATH; Homeobox protein HAT3.1
TrEMBLA0A0B0PK650.0A0A0B0PK65_GOSAR; Homeobox-leucine zipper protein HAT3
STRINGGorai.005G234300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72702543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.16e-91Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain
Publications ? help Back to Top
  1. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]