PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A03G1199
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TALE
Protein Properties Length: 314aa    MW: 35430 Da    PI: 4.8131
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A03G1199genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.42.8e-092572912155
                  HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
     Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                  k +yp+++++  LA+++gL+++q+ +WF N+R ++
  Gh_A03G1199 257 KWPYPTEADKLALAESTGLDQKQINNWFINQRKRH 291
                  679*****************************885 PP
2ELK26.21.9e-09212232222
          ELK   2 LKhqLlrKYsgyLgsLkqEFs 22 
                  LK++Llr ++++++sLk EFs
  Gh_A03G1199 212 LKDRLLRRFGSHISSLKLEFS 232
                  9*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.2E-2273117IPR005540KNOX1
PfamPF037905.9E-2275116IPR005540KNOX1
SMARTSM012563.2E-26123174IPR005541KNOX2
PfamPF037913.9E-25127173IPR005541KNOX2
PROSITE profilePS512138.748211231IPR005539ELK domain
SMARTSM011882.1E-4211232IPR005539ELK domain
PfamPF037898.6E-7212232IPR005539ELK domain
PROSITE profilePS5007112.795231294IPR001356Homeobox domain
SuperFamilySSF466894.02E-19232305IPR009057Homeodomain-like
SMARTSM003894.0E-13233298IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.9E-27236295IPR009057Homeodomain-like
CDDcd000869.11E-13240295No hitNo description
PfamPF059204.6E-17251290IPR008422Homeobox KN domain
PROSITE patternPS000270269292IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MDEMYGFNAT GEYADKALMS PENLILPSDY HAWLCSSGRV PMFGSDELIS AASAISEAAS  60
IAPEIRREED MSCVIKAKIA SHPSYPRLLQ AYIDCQKVGA PPQIASILDE ILRENDVNRR  120
DIVPTCLGAD PELDEFMETY CDMLVKFKSD LSRPFDEATT FLNKIEMQLR NLCTGASIRG  180
PSDEGGVSSD EDISGGEVEG QEGQGKSEDR GLKDRLLRRF GSHISSLKLE FSKKKKKGKL  240
PREARQTLLE WWNVHYKWPY PTEADKLALA ESTGLDQKQI NNWFINQRKR HWKPSESMQF  300
AVMDNLSGQF FSED
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.16700.0root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First detected in torpedo stage embryos at the boundaries between the presumptive SAM and the cotyledons. Later expressed between the cotyledons and the meristem, and between the cotyledons. In seedlings, localised in stipules and at the boundaries between the SAM and the emerging primordia. Expressed at the site of lateral roots. {ECO:0000269|PubMed:16798887}.
UniprotTISSUE SPECIFICITY: Expressed predominantly in shoot apices of seedlings, and, to a lower extent, in rosette leaves. {ECO:0000269|PubMed:11311158}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5837052e-62JX583705.1 Gossypium hirsutum clone NBRI_GE16819 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016666045.10.0PREDICTED: homeobox protein knotted-1-like 6
SwissprotQ84JS61e-159KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLA0A1U8HJ090.0A0A1U8HJ09_GOSHI; homeobox protein knotted-1-like 6
STRINGGorai.005G180500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8352785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.11e-137KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]