PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A03G1022
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 534aa    MW: 60606.4 Da    PI: 8.8978
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A03G1022genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.68.4e-171299499
                 E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3  4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                 v+  s++++ + l++p  f ++ +g   +s  + l+ +sg sW+vkl   ++ +  ++ +GW +Fv ++ L+ g+++vF++dg+  f   vkvf++
  Gh_A03G1022 12 VF--SSTSSANSLRIPVGFNRNLEGR--GSGSVLLKGPSGYSWNVKL--VQRNDDLLFDEGWADFVADHSLECGEILVFRYDGDLVF--DVKVFDQ 99
                 44..77788888*******9888877..5668***************..777778**************************998777..9999987 PP
2B353.35.1e-17227320298
                  EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  + ++++ +v+ s  l +p +fa eh   ++++++++l++++g  W+v+    ++   +++l +GW +Fv++n++k+gD+++F+l++  +fe++v+++r
  Gh_A03G1022 227 VRIMKRFNVSGSYTLNIPYQFAMEHL--PNCKTEIVLRNLKGACWTVNSVPtTRVHTSHTLCGGWLSFVRSNEIKAGDICIFELVH--KFEFRVHILR 320
                  56667778888899********9996..45899***************954566666799***********************987..7888999987 PP
3B348.12e-154405201396
                  TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
           B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                  s  l +p kf +eh   + ++++++l++++g  W+v+   + k+++ +++ +GW  Fv++n++k gD+++F+l+++   e++v++
  Gh_A03G1022 440 SYTLKIPYKFSKEHL--PYCKTQVVLRNLQGTCWTVNSLPDSKGRAvHTFCGGWMAFVRDNEIKIGDICIFELVNN--YEMRVHI 520
                  45699*********4..346778***************6655555579999*********************9875..4445655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.2E-232102IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-222102IPR015300DNA-binding pseudobarrel domain
CDDcd100176.05E-16798No hitNo description
PROSITE profilePS5086315.0027100IPR003340B3 DNA binding domain
SMARTSM010191.1E-129100IPR003340B3 DNA binding domain
PfamPF023625.4E-141199IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.5E-24217320IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.47E-25219321IPR015300DNA-binding pseudobarrel domain
CDDcd100172.06E-19224320No hitNo description
SMARTSM010191.5E-15226322IPR003340B3 DNA binding domain
PROSITE profilePS5086313.592226322IPR003340B3 DNA binding domain
PfamPF023621.7E-14226320IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-22420522IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.06E-24422522IPR015300DNA-binding pseudobarrel domain
CDDcd100177.58E-19426520No hitNo description
PROSITE profilePS5086313.281428524IPR003340B3 DNA binding domain
SMARTSM010197.5E-11428524IPR003340B3 DNA binding domain
PfamPF023621.6E-12437519IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MSKPRRPHFL NVFSSTSSAN SLRIPVGFNR NLEGRGSGSV LLKGPSGYSW NVKLVQRNDD  60
LLFDEGWADF VADHSLECGE ILVFRYDGDL VFDVKVFDQS SCEKEVAFHC KCSQAGSVFH  120
GIVRQKRYRE EDDVSLDQDC EELLKRIRQS SFESDRDEEH CGRELILATT SCQGLTSCDE  180
NHDGTILKIT GKEDDLKLHG SGCIQMIGEF EEKKVAQSFN SCFPFFVRIM KRFNVSGSYT  240
LNIPYQFAME HLPNCKTEIV LRNLKGACWT VNSVPTTRVH TSHTLCGGWL SFVRSNEIKA  300
GDICIFELVH KFEFRVHILR VGQEDLIRQS RKAVLDRSDS TLLKKFVKNT SKVHSKLKKV  360
QICDNKGSKV LDKWKYGNAA KKSASVVLCS LSRSGTEKQE AAIRGLRMMM TVDEEKAARS  420
FASRFPSFVR IMRKFNISGS YTLKIPYKFS KEHLPYCKTQ VVLRNLQGTC WTVNSLPDSK  480
GRAVHTFCGG WMAFVRDNEI KIGDICIFEL VNNYEMRVHI SGSGRKGLDR HTSL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.157970.0boll
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1098867510.0
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016665866.10.0PREDICTED: B3 domain-containing protein Os11g0197600-like isoform X1
RefseqXP_016665867.10.0PREDICTED: B3 domain-containing protein Os11g0197600-like isoform X1
TrEMBLA0A1U8HIG10.0A0A1U8HIG1_GOSHI; B3 domain-containing protein Os11g0197600-like isoform X1
STRINGGorai.005G105400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16907911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.16e-20B3 family protein