PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A03G0957
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 761aa    MW: 83280.4 Da    PI: 5.6283
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A03G0957genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.75.3e-2098153156
                  TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  +++ +++t++q++e+e++F+++++p+ ++r+eL ++lgL+  qVk+WFqN+R+++k
  Gh_A03G0957  98 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELGRELGLEPLQVKFWFQNKRTQMK 153
                  688999***********************************************999 PP
2START216.78e-682815011206
                  HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEE CS
        START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevi 85 
                  ela +a++elv++++ +ep+W++s      ++n++e++++f+++ +     ++ ea+++++vv+ ++ +lve+l+d++ qW++ +     ka+tl+v+
  Gh_A03G0957 281 ELAVAAMEELVRMVQMGEPLWMTSLdgttCMLNEEEYIRTFPSGIGpkptgFKCEASKETTVVITNHINLVEILMDVN-QWSTVFSgiisKASTLDVL 377
                  57899********************99999***********99999********************************.******************* PP

                  CTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSX CS
        START  86 ssg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrl 176
                  s+g      galq+m+ae+q+lsplvp R++++vRy++q+ +g+w++vdvS+d  ++ p+    vR++++pSg++i++++ng+skvtwvehv++++  
  Gh_A03G0957 378 STGvagnynGALQVMTAEFQVLSPLVPtRESYYVRYCKQHAEGTWAVVDVSLDTIRPSPT----VRCRRRPSGCIIQEMPNGYSKVTWVEHVEVDDGG 471
                  *********************************************************996....********************************** PP

                  XHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
        START 177 phwllrslvksglaegaktwvatlqrqcek 206
                  +h+l+++lv+sg+a+ga++wv+tl+rqce+
  Gh_A03G0957 472 VHNLYKQLVSSGHAFGARRWVSTLDRQCER 501
                  ****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-2276153IPR009057Homeodomain-like
SuperFamilySSF466893.72E-1984155IPR009057Homeodomain-like
PROSITE profilePS5007116.68295155IPR001356Homeobox domain
SMARTSM003894.0E-1996159IPR001356Homeobox domain
CDDcd000861.59E-1898156No hitNo description
PfamPF000461.2E-1798153IPR001356Homeobox domain
PROSITE profilePS5084844.672272504IPR002913START domain
SuperFamilySSF559613.23E-35274503No hitNo description
CDDcd088753.66E-125276500No hitNo description
SMARTSM002349.8E-64281501IPR002913START domain
PfamPF018522.3E-57282501IPR002913START domain
Gene3DG3DSA:3.30.530.203.1E-6377467IPR023393START-like domain
SuperFamilySSF559616.05E-24521753No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 761 aa     Download sequence    Send to blast
MPAGVMIPAR NMPSMITGNG SVSGYGTSSG LALGQIMFQQ PNNMMEGQLH PLEMTQNASE  60
SEIARMRDEE FDSTNKSGSE NHELGGSGDD QDPRPNKKKR YHRHTQHQIQ EMEAFFKECP  120
HPDDKQRKEL GRELGLEPLQ VKFWFQNKRT QMKTQHERHE NTQLRAEIEK LRADNMRYRE  180
ALSTASCPNC GGPTAVGQMS FDEHHLRLEN SRLREEIDRI SAIAAKYVGK PVVNFPLLSS  240
PALPRPFDFG SQPVTEEMYG VGDLLRSISA PSEADKPMII ELAVAAMEEL VRMVQMGEPL  300
WMTSLDGTTC MLNEEEYIRT FPSGIGPKPT GFKCEASKET TVVITNHINL VEILMDVNQW  360
STVFSGIISK ASTLDVLSTG VAGNYNGALQ VMTAEFQVLS PLVPTRESYY VRYCKQHAEG  420
TWAVVDVSLD TIRPSPTVRC RRRPSGCIIQ EMPNGYSKVT WVEHVEVDDG GVHNLYKQLV  480
SSGHAFGARR WVSTLDRQCE RLASLMASNI PTGDVGVITN QDGRKSMLKL AERMVISFCG  540
GVSASTAHTW TTLSGTGADD VRVMTRKSVD DPGRPPGIVL SAATSFWLPV SPKRVFDFLR  600
DEHSRSEWDI LSNGGAVQEM AHIANGRDPG NCVSLLRVNS ANSSQSNMLI LQESCTDPTA  660
SFVIYAPVDI VAMNVVLNGG DPDYVALLPS GFAILPDGMT VTDVGMADSG GSSGSLLTVA  720
FQILVDSVPT AKLSLGSVAT VNNLIACTVE RIKASLSCDN A
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.133581e-176boll| ovule
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO783441281e-176
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hairless cell files of the hypocotyl epidermis. Expressed in shoot apical meristem (SAM) with higher levels in L1 cells and the epidermal layer of young leaves. Expressed in primary root tips, in the L1 of apical inflorescence meristems, early flower primordia, carpel epidermis, ovule primordia, nucellus, chalaze and seed coat. {ECO:0000269|PubMed:16778018}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016667112.10.0PREDICTED: homeobox-leucine zipper protein HDG2-like isoform X1
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLA0A1U8HM360.0A0A1U8HM36_GOSHI; homeobox-leucine zipper protein HDG2-like isoform X1
STRINGGorai.005G150100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49128149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2