PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A03G0884 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 353aa MW: 39686.9 Da PI: 7.2223 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 62.9 | 3.5e-20 | 10 | 53 | 2 | 45 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 + en rq t++kR++gi+KKA+ELS+LCd+e+ +++fs+t+k Gh_A03G0884 10 KLENPNGRQATYAKRKHGIMKKANELSILCDVEIVLLMFSPTNK 53 5689999**********************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.2E-28 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 23.521 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.07E-24 | 2 | 82 | No hit | No description |
SuperFamily | SSF55455 | 1.57E-24 | 2 | 94 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.7E-16 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.4E-18 | 11 | 54 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.7E-16 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.7E-16 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010152 | Biological Process | pollen maturation | ||||
GO:0080092 | Biological Process | regulation of pollen tube growth | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 353 aa Download sequence Send to blast |
MGRVKLKIKK LENPNGRQAT YAKRKHGIMK KANELSILCD VEIVLLMFSP TNKPSLCIGK 60 RSSIEEIIEK FAQLTPQERA KRYAQIFCAL KKTFKKLDHD VNIHEFLGSS TQTIEELTNQ 120 ARLLQTRLSE VHRRLSCWTN VDKINNVEQL GQMEDSLKEY LNQIQAHKEN LGKQQQLLSL 180 ECTSQFQNEM QVPYRMGLEH QLQTLSWLPN QDSRHIALSD DPNLIPHRDV ECSASSSFGS 240 YSGYFGTGKS SEPSSSGQEN SILNDLSGNG SLQLQLGGQC PLFSYNLNIL NDPKFPPVAE 300 MNFNETPADY QVNGALQGPR TGFDTAPGSW ASTSGSCAVT MFDEPLYTRL QQH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 8e-13 | 1 | 96 | 1 | 94 | MEF2C |
5f28_B | 8e-13 | 1 | 96 | 1 | 94 | MEF2C |
5f28_C | 8e-13 | 1 | 96 | 1 | 94 | MEF2C |
5f28_D | 8e-13 | 1 | 96 | 1 | 94 | MEF2C |
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Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269|PubMed:12949148}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016666939.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL30 isoform X1 | ||||
Refseq | XP_017641040.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL30 isoform X3 | ||||
Swissprot | Q1PFA4 | 1e-112 | AGL30_ARATH; Agamous-like MADS-box protein AGL30 | ||||
TrEMBL | A0A1U8HUA8 | 0.0 | A0A1U8HUA8_GOSHI; agamous-like MADS-box protein AGL30 isoform X1 | ||||
STRING | Gorai.005G142100.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8754 | 25 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03060.2 | 5e-95 | AGAMOUS-like 30 |
Publications ? help Back to Top | |||
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