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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A03G0614 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C2H2 | ||||||||
Protein Properties | Length: 426aa MW: 47972.7 Da PI: 7.7315 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.2 | 0.00054 | 100 | 119 | 2 | 21 |
EETTTTEEESSHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHir 21 +C+ Cgk F ++ L H++ Gh_A03G0614 100 VCKECGKGFQSWKALFGHMK 119 6******************7 PP | |||||||
2 | zf-C2H2 | 12 | 0.00062 | 339 | 361 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C k+F++ L H r+H Gh_A03G0614 339 HECPICLKVFPSGQALGGHKRSH 361 79******************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.15 | 9 | 31 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 3.7E-6 | 9 | 32 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.307 | 9 | 31 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 7.05E-8 | 9 | 31 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 11 | 31 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 7.05E-8 | 94 | 121 | No hit | No description |
SMART | SM00355 | 0.017 | 99 | 121 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.803 | 99 | 126 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 101 | 121 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.1E-7 | 101 | 123 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.36 | 268 | 290 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 6.28E-7 | 268 | 290 | No hit | No description |
Pfam | PF13912 | 3.2E-10 | 268 | 292 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.889 | 268 | 295 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 270 | 290 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 6.28E-7 | 334 | 361 | No hit | No description |
SMART | SM00355 | 0.071 | 339 | 361 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 5.9E-13 | 339 | 361 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.058 | 339 | 366 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 341 | 361 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 426 aa Download sequence Send to blast |
MEEEQEFKHV CKFCSKSFPC GRSLGGHMRS HMNNIIINNN NSIETDEKLC KKKLVTLNNV 60 GHDSNTDETG VDGGYILREN PKKTWRLTDL SEDSSVHDKV CKECGKGFQS WKALFGHMKC 120 HSDKEKSPVN SLEEQDSWSH GEQKPVVDSQ SDNETGVPSK KRRSKRRTRY IGTRNSVMSE 180 IEQEQQEEVA LSLMMLSRDV RHWVGLNSDN SMFSEAKIQI KKPKLKNLES AVMKSERKNK 240 NLVIQTYDQT SDVVESEFCK DPHKRSKFEC TTCKKIFHSY QALGGHRASH KRTKGCSASD 300 NSETSTETET SPEPNPTSAT DTANFVSDSN GVVKKNKGHE CPICLKVFPS GQALGGHKRS 360 HLVAEAKENR SQTIETQNPI PEIRDFLDLN LPAPVEEGTS SVHMGFEPWW VGTTHKHEPL 420 LGLISN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 159 | 164 | KKRRSK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017640842.1 | 0.0 | PREDICTED: zinc finger protein ZAT1-like | ||||
TrEMBL | A0A1U8HL07 | 0.0 | A0A1U8HL07_GOSHI; zinc finger protein ZAT1-like | ||||
STRING | Gorai.003G100400.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16472 | 9 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26610.1 | 9e-31 | C2H2-like zinc finger protein |