PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A03G0330 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C2H2 | ||||||||
Protein Properties | Length: 157aa MW: 17027.8 Da PI: 9.1632 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12 | 0.00066 | 33 | 55 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k Fs+ L H +H Gh_A03G0330 33 FACKTCNKKFSSFQALGGHRASH 55 78**********99999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.88E-9 | 31 | 100 | No hit | No description |
Pfam | PF13912 | 2.5E-11 | 32 | 57 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.21 | 33 | 55 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.305 | 33 | 60 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 35 | 55 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 5.2E-10 | 77 | 102 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.5 | 78 | 100 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.912 | 78 | 100 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 80 | 100 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
MKRGRDIDAM DMADCLMLLS RVGETDRVAG RVFACKTCNK KFSSFQALGG HRASHKKPKL 60 TVGDNEGLAV SPKKPKTHEC SICGLEFAIG QALGGHMRRH RAALNDGLVT RDLLPEMNKS 120 TGDGRDPSID LGLTSWGVDL ELKLGKVTPT PVVHCFI |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.24816 | 0.0 | ovule| root| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems and flowers. {ECO:0000269|PubMed:9132053}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor involved in light acclimation, cold and oxidative stress responses. May regulate a collection of transcripts involved in response to high-light, cold and oxidative stress. {ECO:0000269|PubMed:11069694, ECO:0000269|PubMed:14722088, ECO:0000269|PubMed:15634197, ECO:0000269|PubMed:16183833}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By H(2)O(2), cold, drought, cold or heat stresses, wounding, cucumber mosaic virus (CMV), exposure to high-intensity light and low-oxygen conditions in roots. {ECO:0000269|PubMed:12368499, ECO:0000269|PubMed:14722088, ECO:0000269|PubMed:15634197, ECO:0000269|PubMed:16183833, ECO:0000269|PubMed:18201973, ECO:0000269|PubMed:18922600}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016755982.1 | 1e-111 | PREDICTED: zinc finger protein ZAT12-like | ||||
Swissprot | Q42410 | 8e-36 | ZAT12_ARATH; Zinc finger protein ZAT12 | ||||
TrEMBL | A0A2P5WP53 | 1e-111 | A0A2P5WP53_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.003G136200.1 | 1e-109 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM531 | 28 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59820.1 | 3e-38 | C2H2 family protein |