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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A03G0189 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | B3 | ||||||||
Protein Properties | Length: 885aa MW: 97802.4 Da PI: 7.0416 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 58.7 | 1.1e-18 | 353 | 452 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+kvl+ sd+++ grlvlpk +ae++ +++ e+ l+++d +g++W++++++ +++s++yvl+ G ++ +L++gD+v+F++++ +++lv+ Gh_A03G0189 353 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQSEGLPLRIQDVNGKEWTFQFRFwpNNNSRMYVLE-GVTPCIHSMQLRAGDTVTFSRID-PGGKLVM 448 99**************************555556677***************9989999999***9.********************887.7777777 PP EEE- CS B3 95 kvfr 98 ++++ Gh_A03G0189 449 GFRK 452 7765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.0E-30 | 350 | 455 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.8E-21 | 350 | 453 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.89E-24 | 351 | 452 | No hit | No description |
PROSITE profile | PS50863 | 10.997 | 353 | 454 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.2E-16 | 353 | 452 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.6E-23 | 353 | 453 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 14.611 | 581 | 631 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 2.4E-11 | 586 | 628 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010030 | Biological Process | positive regulation of seed germination | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:2000034 | Biological Process | regulation of seed maturation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 885 aa Download sequence Send to blast |
MTLKGDLILI FYFDLSSLCW MGSKICMNSS CGAATSNEWK KGWPLRSGGF AHLCYPCGSA 60 YEDGVYCDTF HLEESGWRDC RICGNHLHCG CIASNYLLEL LDYGGVGCMS CAKSSRLHSV 120 KRIQTHGDEI PEGVGAVPMN NAGSSAVEGK AVSDHVDERT LAPLCKSMEA NECNLLPQSQ 180 RGDANASLGQ HRGEEVICPT EKVGAGFSNA TQPYVRPANF AKLDNARPAL DFRDIQDSLP 240 QPYLSMSLGG SSANPNFLLP FSGGLADGKE PSKTWSSFQQ GQQSRRILPK PSKNGLTTSS 300 ELNKGMIPQA RITRPPVEGR GKNHLLPRYW PRITDQELQK LSGDLKSTIV PLFEKVLSAS 360 DAGRIGRLVL PKACAEAYFP PISQSEGLPL RIQDVNGKEW TFQFRFWPNN NSRMYVLEGV 420 TPCIHSMQLR AGDTVTFSRI DPGGKLVMGF RKAANSDTQT PKGGKDLLGN ALSEHFGLPD 480 GNISRSRDEN HGVRANENSG HQLAMNAEKK KTRNIGSKSK RLLMHSVDAL ELRLTWEEAQ 540 DLLRPPPSVR PSIVTIEDHE FEEYDEPPVF GKRTIFGAWP SGEQEQWAQC DDCSKWRRLP 600 VDVLLPSKWT CSDNVWDSSR CACSAPEEIG PKELENILKV GTDLKKTKVQ EGPKVAPEPE 660 PTGLDALASA AVLGDKMGDV GESSVGATTK HPRHRPGCTC IVCIQPPSGK GKHKANCTCN 720 VCLTVKRRFK TLMLRKKKRQ SEREAEISER DNKKQMDETE LKDTRNDHSE NEGSRSRIER 780 EVAEASTGEI DLNCHPIRED VQLEGGLNMM SFVEATSLPV ENYIKQNGIE SLKTEQQQQG 840 SLGSHFQSKA NRENERPLSD EEFLASVGWE RVGHKEPSLE RNSLQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 2e-69 | 331 | 456 | 2 | 127 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 725 | 736 | KRRFKTLMLRKK |
2 | 725 | 738 | KRRFKTLMLRKKKR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.19455 | 0.0 | boll |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 73850713 | 0.0 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in flowers and at lower levels in roots, stems and leaves. {ECO:0000269|PubMed:15894743}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor of gene expression involved in embryonic pathways, such as LEC1, ABI3, and FUS3. Repressor of the sugar-inducible genes involved in the seed maturation program in seedlings. Plays an essential role in regulating the transition from seed maturation to seedling growth. Functionally redundant with VAL2/HSL1. {ECO:0000269|PubMed:15894743, ECO:0000269|PubMed:17158584, ECO:0000269|PubMed:17267611}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX581478 | 1e-75 | JX581478.1 Gossypium hirsutum clone NBRI_GE14122 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016755804.1 | 0.0 | PREDICTED: B3 domain-containing transcription repressor VAL1-like | ||||
Swissprot | Q8W4L5 | 0.0 | VAL1_ARATH; B3 domain-containing transcription repressor VAL1 | ||||
TrEMBL | A0A0D2P1Z8 | 0.0 | A0A0D2P1Z8_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.003G152700.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7203 | 26 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30470.1 | 0.0 | high-level expression of sugar-inducible gene 2 |