PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A03G0093
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 627aa    MW: 70473.3 Da    PI: 5.3474
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A03G0093genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS319.28.9e-982666262374
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                   ++L ++Ae+v++g+++ aq +Larl++l sp g+++qR+ +yf+eAL+  l+       ++  +++ ++ +++ ++ a+k+fsevsP+++f ++t N
  Gh_A03G0093 266 LDQLCKVAEMVETGNFSHAQGILARLNHL-SPVGKTFQRIGFYFKEALQLLLFM----YNNTPVSKNPTPFDVIFKMGAYKVFSEVSPFVQFVNFTSN 358
                  679************************98.799********************8....33344555666667************************** PP

         GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpeg.ppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl..eleeL 194
                  qa lea+e ++r+Hi+Dfdi+ G+QW++++q+L  R++g  pslRiT+++s ++ +  el+ ++e+L++fA+ +gv+fe +vl  ++l++   +l ++
  Gh_A03G0093 359 QAFLEALEDSDRIHIVDFDIGFGAQWASFMQELPMRSKGvVPSLRITAFVSLSTYHPIELSLIRENLEQFANGIGVNFELEVLNFDSLDQNpySLPMF 456
                  *************************************55389*********9999****************************888777654488899 PP

         GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                  r++++EalaVn+ +   +    +  l    +++L++vk+l+Pk+vv  ++ +d+n+ sF +++++a++ y +l++sl+a +  +s++ +k+Er+l+ +
  Gh_A03G0093 457 RMNENEALAVNFPVWSASYR--PSIL----PNLLRIVKQLRPKIVVSLDRGCDRNDLSFPQHIINAFYSYISLLESLDAAVNVNSDAINKIERFLIVP 548
                  999**********9776665..4444....56****************************************************************** PP

         GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  +i+  v  +  +     e++  W++ + +aGF+p+++s+++++qa++++++ +++g+++++ ++slvl+W++++L+s+SaWr
  Gh_A03G0093 549 KIETTVLGRLHS----LEKMPPWKSLFASAGFTPLTFSNFTETQAECVVKRAQVRGFHIQKCHASLVLCWQQKELISASAWR 626
                  ******998887....9****************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.168239606IPR005202Transcription factor GRAS
PfamPF035143.1E-95266626IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 627 aa     Download sequence    Send to blast
MHFQFQPKVG VELAGFASIY QDKWAKQQED NSFNDQEPTS VLHMRSQSPP TSASTLSSSF  60
NGGSGGGGSG VNFTTTTIVP PESTQLEFQP IQSELDLVTT GPVGVQRCNN LGIEDWEAML  120
FESTVSPSQD QNSLLRWIAG DVDEHGVKQL LQTGPDFIPG LDPMDPGNLG YFPQNPIFTS  180
PPESIGLYQQ LENQEMKPQI LNPPNPNFFL PFPQEQQPLP KRLNHGQIPK LPFSDHELFI  240
KKQQLVGFQE QKPLMVSQQQ QAATLLDQLC KVAEMVETGN FSHAQGILAR LNHLSPVGKT  300
FQRIGFYFKE ALQLLLFMYN NTPVSKNPTP FDVIFKMGAY KVFSEVSPFV QFVNFTSNQA  360
FLEALEDSDR IHIVDFDIGF GAQWASFMQE LPMRSKGVVP SLRITAFVSL STYHPIELSL  420
IRENLEQFAN GIGVNFELEV LNFDSLDQNP YSLPMFRMNE NEALAVNFPV WSASYRPSIL  480
PNLLRIVKQL RPKIVVSLDR GCDRNDLSFP QHIINAFYSY ISLLESLDAA VNVNSDAINK  540
IERFLIVPKI ETTVLGRLHS LEKMPPWKSL FASAGFTPLT FSNFTETQAE CVVKRAQVRG  600
FHIQKCHASL VLCWQQKELI SASAWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-3429762636375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.208570.0boll
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6228214e-78JX622821.1 Gossypium hirsutum clone NBRI_GE69712 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017642892.10.0PREDICTED: scarecrow-like protein 6
TrEMBLA0A2P5WU950.0A0A2P5WU95_GOSBA; Uncharacterized protein
STRINGGorai.003G170700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2493934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-110GRAS family protein