PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A03G0054
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GATA
Protein Properties Length: 558aa    MW: 61675.7 Da    PI: 7.2746
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A03G0054genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.94.5e-16741135
         GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                 C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  Gh_A03G0054  7 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41
                 ****************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.2E-9155IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.9E-11544No hitNo description
CDDcd002021.32E-16661No hitNo description
Gene3DG3DSA:3.30.50.101.8E-12741IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
PfamPF003207.3E-14741IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.438761IPR000679Zinc finger, GATA-type
PfamPF139191.9E-7274361IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MGKQGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLAKYTPLHA RAEPEDLRAS  60
RVKSISINKD REAKRKPNHD IAIVSPDYNL GFRKFVDEDT SNRSSSGSAI SNSESCAQFG  120
SADVSDLTGP SQSNVWDSMV PSKKRTCVNR PKPSPVEKLT KDLCTILHEQ QSSYFSVSSD  180
DDLLLESETP MVSVEIGHGG ILIKHPSSIA REEESEASSL SFENKQYSMN EAYSHSSSFL  240
AYNDSKGVKY LGHGIEKAKN PAGQGMQHEQ LKRDKAQHEK LLILESCNLP LCNIDLSDII  300
NFEEFVKHLT KDEQQHLLQY LPPLDIAKLP ESLKSMFESP QFEDNLCYFQ QLLEEGVFNI  360
SVPGVNAEDC KTLKRLALIN LTKSHWVEGH HGLKKCSSVG RSVITRGPRV VPSNNSATVK  420
RSLDGQIPGS KLFSAGIAQV LRVNNGILLK KNCVFRFPEA RTLMSPKRVI MKATHEKELI  480
DNESSCFSPR SLFALPPDGS SPVLDSLHFV DECSDQDLLL DVPSNGSFPQ AELLRPTSSF  540
GQQASTSSNS PHPHLVHP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016729948.10.0PREDICTED: GATA transcription factor 26-like
SwissprotQ8W4H11e-145GAT26_ARATH; GATA transcription factor 26
TrEMBLA0A1U8MWQ10.0A0A1U8MWQ1_GOSHI; GATA transcription factor 26-like
STRINGGorai.003G177500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16062785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.31e-138GATA transcription factor 26