PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Gh_A02G1819

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Protein Properties

Length: 116aa MW: 12810.6 Da PI: 10.4101

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A02G1819	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	32	2.2e-10	7	66	36	97
EEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE CS B3 36 ltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvf 97 +++d++g W +k + ++g++ ++ GW +F + n++ +gD+++F++ + +f +++v+ Gh_A02G1819 7 TVIKDPRGGMWLMKT--NVSRGQVRFGCGWFQFLHGNEIAAGDTLLFEHLPNtGNF-IHIQVI 66 4569*********..*****************************98763444.676666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	11.223	1	69	IPR003340	B3 DNA binding domain
CDD	cd10017	1.15E-8	2	63	No hit	No description
Gene3D	G3DSA:2.40.330.10	4.8E-9	6	63	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.94E-10	6	63	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	9.7E-8	6	64	IPR003340	B3 DNA binding domain
PROSITE pattern	PS00354	0	90	100	IPR000637	HMG-I/HMG-Y, DNA-binding, conserved site
Pfam	PF02178	0.0029	92	102	IPR017956	AT hook, DNA-binding motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 116 aa Download sequence Send to blast
MGKESITVIK DPRGGMWLMK TNVSRGQVRF GCGWFQFLHG NEIAAGDTLL FEHLPNTGNF 60 IHIQVINKGG NGNCGRLNKQ ANPCEDTSLA AKRPRGRPRK QIEEPPSTKY APSTAF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	91	99	KRPRGRPRK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017638207.1	3e-82	PREDICTED: uncharacterized protein LOC108479878
TrEMBL	A0A2P5W0G9	3e-81	A0A2P5W0G9_GOSBA; Uncharacterized protein
STRING	Gorai.003G020400.1	7e-40	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14995	6	20