PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A02G1818
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 413aa    MW: 46377.5 Da    PI: 10.4181
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A02G1818genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.31.4e-181196192
                 EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
           B3  1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92
                 ffk+l    ++ ++ l++p  f+ ++  +g+   +++ltl++ sg+sW+v++  +  +g+y++ +GW++Fvk ++L+ gDf+vF l+++s+f  
  Gh_A02G1818 11 FFKIL--IGNFDKK-LRIPPAFV-KYvfKGN--VPTMLTLYSDSGNSWRVRI--KVEQGSYFFNNGWSKFVKYHDLEIGDFLVFFLVDSSTFDV 96
                 56666..5556665.9*******.6658444..4678***************..999999*************************998788744 PP
2B336.96.6e-121772531898
                  --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3  18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  +p  f+ee g+ k +  +++++ ++g  W +    + +s++++l+ GW++F ++n++  gD+++F+++ +++   +v+v++
  Gh_A02G1818 177 IPICFTEEAGLGKVS--MVMVRGPKGGMWPMMT--TFSSKQVLLSVGWSKFLHENEIVIGDTLLFEHVPNTGHLIHVQVVN 253
                  888999999888766..7***************..999999*************************998766667777765 PP
3B353.25.5e-173153961599
                  -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3  15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                   +++p +fa+e ++ +e     +++d++gr+We+++ ++ ks  + l++GW++Fv++n+L++gD++ F+++ +++   ++k+++k
  Gh_A02G1818 315 SVSVPASFAKETSLAEEP--STVIKDSEGRKWELNILVDAKS-NVRLGAGWSQFVQENKLEAGDTISFQHIPNTGNVIYFKIISK 396
                  4799********888654..47779***********877777.579************************988888788888775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.7E-236104IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.06E-247106IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.798102IPR003340B3 DNA binding domain
CDDcd100172.06E-229100No hitNo description
SMARTSM010195.3E-1711102IPR003340B3 DNA binding domain
PfamPF023621.0E-161197IPR003340B3 DNA binding domain
SuperFamilySSF1019361.2E-15157253IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.8E-13158255IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.138160255IPR003340B3 DNA binding domain
SMARTSM010192.3E-5163255IPR003340B3 DNA binding domain
PfamPF023626.1E-9177250IPR003340B3 DNA binding domain
CDDcd100179.43E-9177251No hitNo description
PROSITE profilePS5086313.902301397IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-17301385IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-16302388IPR015300DNA-binding pseudobarrel domain
CDDcd100171.58E-14303387No hitNo description
SMARTSM010197.1E-11304397IPR003340B3 DNA binding domain
PfamPF023621.5E-14315396IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MTRKPKRNPS FFKILIGNFD KKLRIPPAFV KYVFKGNVPT MLTLYSDSGN SWRVRIKVEQ  60
GSYFFNNGWS KFVKYHDLEI GDFLVFFLVD SSTFDVFIYN RTACAKNIIL AAKKRKGRSP  120
GVSRQIEQTP SHKCTSTSKK PRTVPRVQEV EFVSGVTPKN VSYVMVVKGY NKYYAGIPIC  180
FTEEAGLGKV SMVMVRGPKG GMWPMMTTFS SKQVLLSVGW SKFLHENEIV IGDTLLFEHV  240
PNTGHLIHVQ VVNKDGTGNC GSLAGKRPRD RPREQTELPP STKYASSSKR TKGVSELILE  300
QASFVVVLKK YHQYSVSVPA SFAKETSLAE EPSTVIKDSE GRKWELNILV DAKSNVRLGA  360
GWSQFVQENK LEAGDTISFQ HIPNTGNVIY FKIISKARAA NYGDGRNMRK NVC
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017647473.10.0PREDICTED: putative B3 domain-containing protein Os03g0621600
TrEMBLA0A2P5W0I60.0A0A2P5W0I6_GOSBA; Uncharacterized protein
STRINGGorai.003G020700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14995620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31650.15e-19B3 family protein