PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A02G1816
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 432aa    MW: 48724.6 Da    PI: 10.587
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A02G1816genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.61.1e-181197195
                 EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
           B3  1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
                 ffkvl     + ++ l++p  f+ ++  +   + +++ tl++ sg+sW+v++      g+y++ +GW++Fvk ++L+ gDf+vF l+++s+f   v 
  Gh_A02G1816 11 FFKVL--IGDFDNK-LRIPPAFV-KYvlK--GNVPTMFTLYSDSGNSWRVRV--MVEEGSYFFNSGWSKFVKHHDLEIGDFLVFFLVDTSTF--DVL 97
                 56666..5555555.9*******.77463..446779***************..999999*************************9998888..444 PP
2B339.31.2e-121802571798
                  E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  ++p+ fa+e g+ ke+ +tl+ + ++g  W ++   + +++++ l++GW++F ++n++ +gD+++F+++ +++   +v++++
  Gh_A02G1816 180 CVPRCFAKETGLLKES-ITLI-KGPRGGMWPMNT--TECGKQVRLGGGWSQFLHENEIVVGDTLLFEHIPSKGNLVHVQIVN 257
                  689*******998754.4443.67**********..*******************************997666656777665 PP
3B350.15.2e-163414121690
                  EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
           B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                   v+p +fa+e+g+ + ++   ++e+++g++W ++ i++ ks ++ l++GW++Fv++n+L+ gD+++F+++ +++ 
  Gh_A02G1816 341 AVVPTSFAKEMGLAE-KP-STMIENSKGKKWLLNTIVDAKS-QVRLGAGWSQFVQENKLELGDTLLFQHIPNTGN 412
                  599********9885.44.5888************998887.689***********************9876555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.1E-226102IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.3818102IPR003340B3 DNA binding domain
SuperFamilySSF1019362.75E-238104IPR015300DNA-binding pseudobarrel domain
CDDcd100172.86E-239100No hitNo description
PfamPF023623.2E-161195IPR003340B3 DNA binding domain
SMARTSM010191.2E-1711102IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.4E-15161258IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.47E-17161253IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.025164259IPR003340B3 DNA binding domain
CDDcd100171.70E-12166255No hitNo description
SMARTSM010192.1E-6167259IPR003340B3 DNA binding domain
PfamPF023621.1E-9180254IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.8E-17321421IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.33E-15323413IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.435326422IPR003340B3 DNA binding domain
CDDcd100171.22E-11328412No hitNo description
SMARTSM010191.8E-4329422IPR003340B3 DNA binding domain
PfamPF023622.5E-13341414IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MTRKPKRSPS FFKVLIGDFD NKLRIPPAFV KYVLKGNVPT MFTLYSDSGN SWRVRVMVEE  60
GSYFFNSGWS KFVKHHDLEI GDFLVFFLVD TSTFDVLIYN GTACPKNIIL AAKKRKCLPP  120
LANRQIEDTP SQKCASVSKK PKAVYRARSV SQEVESITEV TRKHVSFVMV VKKYHKYFAC  180
VPRCFAKETG LLKESITLIK GPRGGMWPMN TTECGKQVRL GGGWSQFLHE NEIVVGDTLL  240
FEHIPSKGNL VHVQIVNKDR YRNRGRRNKQ ADASVKNTSP AAKRPRVRPC KQIEEPPSTK  300
HAPSSKRTKG VSIGNDEIVS ELTPKKASFV MVLKEYQKYS AVVPTSFAKE MGLAEKPSTM  360
IENSKGKKWL LNTIVDAKSQ VRLGAGWSQF VQENKLELGD TLLFQHIPNT GNVINLKIIC  420
KVGDGNNRKR NK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016692313.10.0PREDICTED: B3 domain-containing protein REM13-like
TrEMBLA0A1U8JU710.0A0A1U8JU71_GOSHI; B3 domain-containing protein REM13-like
STRINGGorai.003G020400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14995620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00260.15e-16B3 family protein