PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Function |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Gh_A02G1702

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Nin-like

Protein Properties

Length: 341aa MW: 39437.5 Da PI: 9.4202

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A02G1702	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	79.7	3.1e-25	208	257	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i ledl+kyF+lpi +A+++L+v+l vLKr+CR++GI+RWPhRkiksl Gh_A02G1702 208 ARIALEDLAKYFDLPIVEASRNLNVGLIVLKRKCREFGIPRWPHRKIKSL 257 6899********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.916	192	277	IPR003035	RWP-RK domain
Pfam	PF02042	1.7E-20	210	257	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MDLSQGPCLT TLVVFENTIN KELIRSLHVY RLENGEENEV EREFVFRKDG PYVETAAAPL 60 LLLQGVPAHE LFEGRVIGLW LCSFAFHIHR LPRFFFIPSL LSISRNPKLK SIPTLTNDLQ 120 LIFQRGCGTE DRGPSRELSK ETCTRDGDNH YHLKRSLLVL DQDLNCLPNS SATSELLKSR 180 QTEQNATGSF RASFFCEKEK RADSKDVARI ALEDLAKYFD LPIVEASRNL NVGLIVLKRK 240 CREFGIPRWP HRKIKSLDGL IRDLLSLSLL LKRLKTQIMQ EEAEQRQQDE AAAYAVAKRR 300 MMLETEKESI EKEPFIELKS ETKRFRQDIF KRRHKARALK N

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016726260.1	0.0	PREDICTED: protein RKD5
Swissprot	O81791	2e-89	RKD5_ARATH; Protein RKD5
TrEMBL	A0A0B0NF67	0.0	A0A0B0NF67_GOSAR; Protein RKD5-like protein
TrEMBL	A0A2P5WDN9	0.0	A0A2P5WDN9_GOSBA; Uncharacterized protein
STRING	Gorai.003G002500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12049	24	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	1e-72	RWP-RK domain-containing protein

Publications ? help Back to Top
Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol., 2017. 213(4): p. 1909-1924 [PMID:27870062]