PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A02G1618
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 1295aa    MW: 142753 Da    PI: 5.256
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A02G1618genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.82.9e-0612721295226
                   -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH    2 ktelCrffartGtCkyGdrCkFaHg 26  
                   +++ C+ f+++G+C++G++C++ H+
  Gh_A02G1618 1272 GQRVCK-FYESGYCNRGASCSYWHP 1295
                   6799**.8899***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.102.0E-8107166IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579032.3E-7109165IPR011011Zinc finger, FYVE/PHD-type
PROSITE profilePS500168.529111177IPR019787Zinc finger, PHD-finger
SMARTSM002496.3E-7113159IPR001965Zinc finger, PHD-type
CDDcd155681.25E-18113158No hitNo description
PROSITE patternPS013590114174IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS5136026.187361494IPR004343Plus-3 domain
SMARTSM007197.1E-45361470IPR004343Plus-3 domain
SuperFamilySSF1590423.66E-31362491IPR004343Plus-3 domain
PfamPF031266.1E-22366467IPR004343Plus-3 domain
SuperFamilySSF552772.49E-16579635IPR003169GYF domain
PROSITE profilePS5082914.784582636IPR003169GYF domain
CDDcd000722.43E-17582639No hitNo description
SMARTSM004445.7E-20583638IPR003169GYF domain
PfamPF022131.2E-12584628IPR003169GYF domain
Gene3DG3DSA:3.30.1490.405.5E-18584635IPR003169GYF domain
SuperFamilySSF902294.08E-612701294IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.2212701295IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1295 aa     Download sequence    Send to blast
MENCQQVESG TALCKRGGGG GGDAENNSDG LNRGVELMNV DHCRKVPLTE DSNLVDVAVR  60
GDGGGMGEVK LGNGVKVVEM KRRRGRPPKN PARNMSSSAP APVTVRKKDE EDVCFICFDG  120
GSLVLCDRHG CPKAYHPACI KRDEAFFRSK AKWNCGWHIC STCQKASYYM CYTCTYSLCK  180
NCTKGADYVN VRGNKGFCGL CLRTIMLIEN STSGNKEMVQ VDFDDKTSWE YLFKMYWVFL  240
KEKLSLTLDE LTKAKNPWKE NAIMEKPFGD LGASFSKRRK MLKQQAFFNK VESVEAEKSG  300
ITKNHLRPTD IISKRSEAVA TQMAVLGNSD GPPIIAIDTR CKTHEKVDEK GQKANPDEFA  360
AIDVHNMNLI YLRRSLMENL IDDVEKFNDK VVGSFVRIRI PCDQKQDIYR LVQVVGTIKA  420
AEPYKIGETT IDVMIEILNL DKREVVSING ISNQELSEDE CQQLRQSIIK SGQIKWFTVG  480
EILEKAMALQ AVRVNDCLDS EILRVKNLCN QASKKGDTKE YPLMLDMRLT LLNSPDERHR  540
RLHEIPDIHR DPNRNLFSDE ASGELDEKKK GMELSVNSIE ADKIWHYQDP LGKIQGPFTM  600
AMLRGWSSSG HFPPELRVWR VSEKQENSIL LTDALVGQYS QLQQLVQHSR MPTEDASMAT  660
EDGCRNRDED ARESKDQKVN PMESKQPEGS LNPMQNDTSG HCQNNDSAKS KELGSQSSTC  720
TAPVDIVSSD AAETGNSVPH WDSMKGDNYF PGQPQASSSL PASTISEKPC ETESDQVSKG  780
HGVERWDCGS IDMNLNLNKT SEGQIIDGNV KQDDNDGKSV KPSGQCWRAP PLNDGSNGWN  840
SNSGLLYLAR ALEVSELNQD IDFPDLPTST SKLNHEDSKG QDTKNKQSLS SNVPQLDSGP  900
TWSTASSLVG NGPQLPEVAG EWGGYSSNST RPSLGEWNPD LVPKSSIKPT DLGSDHAATP  960
TSGSGQLTHS SPTDPPNNES GWDSIVPEPN EYSLGDESVS DLLAEVEAME SLNGLASPTS  1020
ILRCDGDLAQ GSEPDCFSPV GGLSPAPDPG KSDALSSTND LQMSSLAALT NELFGISTSE  1080
VLDAQKSSGG HSSTSAEMDE DTRPSDVSVN QYEARSDMQP PAQPVTTWGM TTVGSHWRPG  1140
PETTGTNWGA VHGNTSFHWD DLGQETTNLS WGTGHGTIQE NRSSIHSGTS ATNPAYFGNQ  1200
QRYVDTRDQQ RYVDPRDQQR YVDPRDQQRY VDTRDRDFHS RGRSSWNRHS SYGGGGGPPP  1260
NRVGSFRPPP KGQRVCKFYE SGYCNRGASC SYWHP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4gnd_A6e-14104186887Histone-lysine N-methyltransferase NSD3
4gnd_C6e-14104186887Histone-lysine N-methyltransferase NSD3
4gne_A6e-14104186887Histone-lysine N-methyltransferase NSD3
4gnf_A6e-14104186887Histone-lysine N-methyltransferase NSD3
4gng_A6e-14104186887Histone-lysine N-methyltransferase NSD3
4gng_D6e-14104186887Histone-lysine N-methyltransferase NSD3
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.230510.0boll| ovule
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6144471e-110JX614447.1 Gossypium hirsutum clone NBRI_GE57824 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016724782.10.0PREDICTED: zinc finger CCCH domain-containing protein 44-like
TrEMBLA0A1U8MD540.0A0A1U8MD54_GOSHI; zinc finger CCCH domain-containing protein 44-like
STRINGGorai.003G011400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1764523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51120.11e-104DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding