PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HD-ZIP

Protein Properties

Length: 211aa MW: 24216.6 Da PI: 5.5141

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A02G1563	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.3	1.5e-19	58	112	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 k++++++eq++ Le F +++++ e++ +LA++lgL+ rqV vWFqNrRa++k+ Gh_A02G1563 58 KKRKLSQEQVDLLELNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKN 112 45699************************************************95 PP
2	HD-ZIP_I/II	117.7	6.6e-38	58	149	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 kkr+ls+eqv lLE +F +e+kLe+erK +la+eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+ ++ ++ e++rLe+ev +L+++l+e Gh_A02G1563 58 KKRKLSQEQVDLLELNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSKLKTIHEGVVLEKCRLESEVLKLKDQLRE 149 9****************************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	16.827	53	113	IPR001356	Homeobox domain
SMART	SM00389	1.8E-17	56	117	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.4E-17	58	120	IPR009057	Homeodomain-like
Pfam	PF00046	1.1E-16	58	112	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.6E-20	60	120	IPR009057	Homeodomain-like
CDD	cd00086	3.97E-14	60	114	No hit	No description
PRINTS	PR00031	1.3E-5	84	93	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	88	111	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.3E-5	93	109	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MTTQMKELED PMALITQMYP CIYTQVAPQQ GEISKPRRRQ KKNKGGESGA ATAAETAKKR 60 KLSQEQVDLL ELNFGNEHKL ESERKDRLAS ELGLDPRQVA VWFQNRRARW KNKKLEEEYS 120 KLKTIHEGVV LEKCRLESEV LKLKDQLREA EKEIQGLTER VDGVSSNSPS SSSVLSMEAM 180 DPPPFLGEFG VQGFEDQDVF YIGMEWMNLY M

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.9281	0.0	boll\| ovule

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Widely expressed. {ECO:0000269\|PubMed:16055682}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269\|PubMed:16055682}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017641142.1	1e-125	PREDICTED: homeobox-leucine zipper protein ATHB-40-like
Swissprot	Q9ZU70	1e-73	ATB21_ARATH; Homeobox-leucine zipper protein ATHB-21
TrEMBL	A0A2P5S8Q7	1e-129	A0A2P5S8Q7_GOSBA; Uncharacterized protein
STRING	Gorai.003G016600.1	1e-122	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2208	26	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	4e-67	homeobox protein 40

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] González-Grandío E, et al. Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254 [PMID:28028241]