PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

TALE

Protein Properties

Length: 678aa MW: 73919.7 Da PI: 7.197

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A02G1546	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.7	2.3e-09	471	508	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps +++ LA+++gL+ +qV++WF N R + Gh_A02G1546 471 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 508 664559******************************88 PP
2	BELL	94.3	1.1e-30	348	402	18	72
BELL 18 eVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +Vd+rY++y+eq+qtv++sF+ v+g+g+a pYt+lA+ka+SrhFrcLkdai++q+ Gh_A02G1546 348 KVDRRYNHYCEQMQTVVNSFDLVMGYGAAIPYTALAQKAMSRHFRCLKDAISSQL 402 7***************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	2.9E-65	270	400	IPR006563	POX domain
Pfam	PF07526	1.4E-39	276	399	IPR006563	POX domain
PROSITE profile	PS50071	12.455	449	512	IPR001356	Homeobox domain
CDD	cd00086	1.12E-12	452	513	No hit	No description
SMART	SM00389	1.2E-9	452	516	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.82E-17	453	519	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.8E-29	455	518	IPR009057	Homeodomain-like
Pfam	PF05920	3.3E-18	469	508	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 678 aa Download sequence Send to blast
MASQGYHHHH HHHHQAAAGI FSFSNGFERS AINHQEQQQQ LVQQIRRDKL RVQGFEPPPP 60 PLVGIEEEES NALPVYESTG MLLSEMFYFP SSVTVTAAST ELLDQSLQAN YRGQLGESKN 120 DRDSLAQQQQ LPSINADSAA AMHLFLMNPQ TRSPSPPPPQ PQPPPRGFHG GAFPPQFTWV 180 PDNSHEGGHG QGQGQGQGQG LSLSLSSLQH LEAAKLYYNQ GGATGGADGG GGSSATATAQ 240 FQYKHDHHSP HQPLGLVQNH QVHVGYNSSL GMVNALRNSK YTKPAQELLE EFCSVGSGRF 300 KKKKLGKNNI NPSSNPSNDG TTTNGSSSST KDLPPFSASD RIEHQRRKVD RRYNHYCEQM 360 QTVVNSFDLV MGYGAAIPYT ALAQKAMSRH FRCLKDAISS QLKHSCELLG EKDGVGTSGI 420 TKGETPRLRM LEQSLRQQKA FHQIGMMEHE AWRPQRGLPE RSVNILRAWL FEHFLHPYPS 480 DADKHLLARQ TGLSRNQVSN WFINARVRLW KPMVEEMYQQ ESKEGGDNNK GTRTNNNAAQ 540 TSTPSTTAVG GAGGASPPPQ PPENDPSLIG TNTTQCFSEN QLTNTGTSTT NTSTATEVTP 600 PVSDSDIHQR LLAVTDDTCH RGSNNIVGTI TADNTDIGST LIRFGTTGGD VSLTLGLRHA 660 GNMPDKASSF SVTDFEGC

Sequence ? help Back to Top

Protein Sequence Length: 678 aa Download sequence Send to blast

MASQGYHHHH HHHHQAAAGI FSFSNGFERS AINHQEQQQQ LVQQIRRDKL RVQGFEPPPP  60
PLVGIEEEES NALPVYESTG MLLSEMFYFP SSVTVTAAST ELLDQSLQAN YRGQLGESKN  120
DRDSLAQQQQ LPSINADSAA AMHLFLMNPQ TRSPSPPPPQ PQPPPRGFHG GAFPPQFTWV  180
PDNSHEGGHG QGQGQGQGQG LSLSLSSLQH LEAAKLYYNQ GGATGGADGG GGSSATATAQ  240
FQYKHDHHSP HQPLGLVQNH QVHVGYNSSL GMVNALRNSK YTKPAQELLE EFCSVGSGRF  300
KKKKLGKNNI NPSSNPSNDG TTTNGSSSST KDLPPFSASD RIEHQRRKVD RRYNHYCEQM  360
QTVVNSFDLV MGYGAAIPYT ALAQKAMSRH FRCLKDAISS QLKHSCELLG EKDGVGTSGI  420
TKGETPRLRM LEQSLRQQKA FHQIGMMEHE AWRPQRGLPE RSVNILRAWL FEHFLHPYPS  480
DADKHLLARQ TGLSRNQVSN WFINARVRLW KPMVEEMYQQ ESKEGGDNNK GTRTNNNAAQ  540
TSTPSTTAVG GAGGASPPPQ PPENDPSLIG TNTTQCFSEN QLTNTGTSTT NTSTATEVTP  600
PVSDSDIHQR LLAVTDDTCH RGSNNIVGTI TADNTDIGST LIRFGTTGGD VSLTLGLRHA  660
GNMPDKASSF SVTDFEGC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	2e-16	458	516	5	63	Homeobox protein Meis2
3k2a_B	2e-16	458	516	5	63	Homeobox protein Meis2
4xrm_A	2e-16	458	516	5	63	Homeobox protein Meis2
4xrm_B	2e-16	458	516	5	63	Homeobox protein Meis2
4xrs_A	2e-16	458	515	1	58	Homeobox protein Meis1
4xrs_B	2e-16	458	515	1	58	Homeobox protein Meis1
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in lateral organs. {ECO:0000269\|PubMed:17873098}.
Uniprot	TISSUE SPECIFICITY: Expressed in lateral organs. {ECO:0000269\|PubMed:17873098}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.
UniProt	Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression. {ECO:0000269\|PubMed:17873098}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX622544	0.0	JX622544.1 Gossypium hirsutum clone NBRI_GE69320 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016729525.1	0.0	PREDICTED: BEL1-like homeodomain protein 4
Swissprot	Q94KL5	1e-150	BLH4_ARATH; BEL1-like homeodomain protein 4
Swissprot	Q9SW80	1e-150	BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBL	A0A1U8MRT0	0.0	A0A1U8MRT0_GOSHI; BEL1-like homeodomain protein 4
STRING	Gorai.003G018100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2166	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23760.3	1e-133	BEL1-like homeodomain 4

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]