PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A02G1517 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | B3 | ||||||||
Protein Properties | Length: 117aa MW: 13383.8 Da PI: 11.0535 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 59.1 | 8.1e-19 | 5 | 103 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.sefelvvk 95 f+k+l s + + +rl+lp k++++ + + l ++d +gr+W + +++r+++ vl++GW +Fvk + Lk gD ++Fkl+ + ++ ++++ Gh_A02G1517 5 FVKIL--SKTDTGKRLSLPTKYMKHLpRIRRGHAVNLAVMDAQGRQWHFGYTIRRNGHPkPVLSAGWHDFVKGKYLKPGDQIIFKLEANdADALYTIG 100 88999..66666677********6559666667889***************885554445**************************977677777777 PP EE- CS B3 96 vfr 98 v r Gh_A02G1517 101 VKR 103 766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 12.224 | 3 | 105 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.7E-20 | 4 | 95 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.54E-17 | 4 | 92 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 7.1E-15 | 5 | 104 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.69E-20 | 5 | 103 | No hit | No description |
SMART | SM01019 | 6.6E-10 | 5 | 102 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 117 aa Download sequence Send to blast |
MALQFVKILS KTDTGKRLSL PTKYMKHLPR IRRGHAVNLA VMDAQGRQWH FGYTIRRNGH 60 PKPVLSAGWH DFVKGKYLKP GDQIIFKLEA NDADALYTIG VKRRIRLLGT EVWTAVC |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012472265.1 | 1e-77 | PREDICTED: B3 domain-containing transcription factor VAL3-like | ||||
TrEMBL | A0A2P5Y1T8 | 8e-80 | A0A2P5Y1T8_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.003G022700.1 | 2e-79 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM22071 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21550.1 | 1e-12 | VP1/ABI3-like 3 |