PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A02G1369 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 306aa MW: 34544.2 Da PI: 6.7936 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.4 | 3.3e-18 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lv+ +++ G g+W++ ++ g++R++k+c++rw +yl Gh_A02G1369 15 KGPWTPEEDQKLVKFIHENGHGSWRALPKLAGLNRCGKSCRLRWTNYL 62 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 54.5 | 2.6e-17 | 68 | 113 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ eE++ +++++ lG++ W++Ia++++ gRt++++k++w+++l Gh_A02G1369 68 RGKFSHEEEQTILNLHSILGNK-WSAIASHLP-GRTDNEIKNFWNTHL 113 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.152 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.62E-31 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.7E-15 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-17 | 15 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-23 | 16 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.59E-11 | 17 | 62 | No hit | No description |
PROSITE profile | PS51294 | 26.44 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 1.8E-16 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.6E-16 | 68 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.18E-12 | 70 | 113 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-27 | 70 | 118 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MGRSPCCDEN TGLKKGPWTP EEDQKLVKFI HENGHGSWRA LPKLAGLNRC GKSCRLRWTN 60 YLRPDIKRGK FSHEEEQTIL NLHSILGNKW SAIASHLPGR TDNEIKNFWN THLKKKLIQM 120 GIDPMTHRPR TDMFSSLPYL IALANLKELM DQPWEEQALR LKAEAVQMAN LQSLQYLLQL 180 TSVPTSSTST IINTFTDMDA INTLLNPVSI NKDSSTNIAT AAAASLQGFN DSIPFPRLPD 240 LHQVPSTKTD VEKLDNSSMV PNVAETLTHN LGDIACSYKE ADHLSVWPHH DDHHLIFEDP 300 LFHELS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-28 | 13 | 117 | 5 | 108 | B-MYB |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Specifically and transiently expressed in root endodermal cells overlying the early stages of lateral root primordia formation. {ECO:0000269|PubMed:24902892, ECO:0000269|PubMed:25482809}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016725568.1 | 0.0 | PREDICTED: protein ODORANT1-like | ||||
Refseq | XP_017621054.1 | 0.0 | PREDICTED: protein ODORANT1 | ||||
Swissprot | Q9S9Z2 | 1e-102 | MYB93_ARATH; Transcription factor MYB93 | ||||
TrEMBL | A0A1U8MIZ8 | 0.0 | A0A1U8MIZ8_GOSHI; protein ODORANT1-like | ||||
TrEMBL | A0A2P5WCE9 | 0.0 | A0A2P5WCE9_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.003G039500.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34670.1 | 3e-99 | myb domain protein 93 |
Publications ? help Back to Top | |||
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