PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Gh_A02G0958

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 842aa MW: 92266.1 Da PI: 4.9287

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A02G0958	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.4	0.00014	638	676	13	55
HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R+ i +++ eLr ++P++ +k ls Le++++Y+ Lq Gh_A02G0958 638 RQLIQDRIKELRGIIPHN----GKPLSIDHLLEQTIKYLIFLQ 676 67799**********9....788************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	8.5E-14	58	150	IPR025610	Transcription factor MYC/MYB N-terminal
PROSITE profile	PS50888	9.248	625	675	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 842 aa Download sequence Send to blast
MGEAEKVSML KQTLINLCCS NGWCYGVFWR FDQRNSMLLT MEDAYYEEQM RPLVNSMLQK 60 FHILGEGIIG QAAFTGKHRW IFSDSYGKSS NSYTGNQITF QDESELQNQI SCGIKTIAII 120 SLGRQGAVQV GSTQKILERL DFLDETKKLF CDGGSFHGLT PLEIEACNQD DSFAALRSCG 180 NIYNENLATE LYGFPREPKG WPCSLKNVTE SSIFMREIRD PSVNSVVQNL SHLRNQRQTS 240 NAEALFLSSG KISPVNCLAA YTPCTSTWRS EGSILTSFET SFPSESGIWD SPNMLPKAND 300 LALSGNMEQK LQGASTFSSL YSIGELVDAE LPTLDSYGKT AEYQCSFGTN SRLLDDAINL 360 QRITEDFNPA DFTIDLCNSF NLDDLSQLFS PLPQHDINGT GATIISDVSS SVGVTSVSSA 420 LVGGDTLVDI PVQQTANSLQ SSITEASISN AEISTIVHDN GTDLFDGMGL DYAFGKTGES 480 LEDIIVPLLH GDNATVTSGM SETVSQLDVR AMNGKRKGLF SELGLEKLLD GVNNSSHATK 540 SSVGDQLSIM KRRKTESSSS SFCQGQFVGL SYSGGSMNPV HHSHTIFNKD IHRKSQVGAW 600 IDYSYSVNGG QAVAATSKKP AKKRAKPGES TRPRPKDRQL IQDRIKELRG IIPHNGKPLS 660 IDHLLEQTIK YLIFLQGVTK YADKIKQADE PKIIGNEDGM LPKHNMISGG ATWAFEVGAQ 720 SIPIVVKDLN PPGQMLIEML CEDQGFFLEI ANVIRGIGLN ILRAVMELQE DKIWARFIVE 780 AKEQVERTCI IWSLLPLLQQ TGGSGIDSAS QPSNDVNGGI PLSNNYLQPF PLPPLNMAET 840 FQ

Sequence ? help Back to Top

Protein Sequence Length: 842 aa Download sequence Send to blast

MGEAEKVSML KQTLINLCCS NGWCYGVFWR FDQRNSMLLT MEDAYYEEQM RPLVNSMLQK  60
FHILGEGIIG QAAFTGKHRW IFSDSYGKSS NSYTGNQITF QDESELQNQI SCGIKTIAII  120
SLGRQGAVQV GSTQKILERL DFLDETKKLF CDGGSFHGLT PLEIEACNQD DSFAALRSCG  180
NIYNENLATE LYGFPREPKG WPCSLKNVTE SSIFMREIRD PSVNSVVQNL SHLRNQRQTS  240
NAEALFLSSG KISPVNCLAA YTPCTSTWRS EGSILTSFET SFPSESGIWD SPNMLPKAND  300
LALSGNMEQK LQGASTFSSL YSIGELVDAE LPTLDSYGKT AEYQCSFGTN SRLLDDAINL  360
QRITEDFNPA DFTIDLCNSF NLDDLSQLFS PLPQHDINGT GATIISDVSS SVGVTSVSSA  420
LVGGDTLVDI PVQQTANSLQ SSITEASISN AEISTIVHDN GTDLFDGMGL DYAFGKTGES  480
LEDIIVPLLH GDNATVTSGM SETVSQLDVR AMNGKRKGLF SELGLEKLLD GVNNSSHATK  540
SSVGDQLSIM KRRKTESSSS SFCQGQFVGL SYSGGSMNPV HHSHTIFNKD IHRKSQVGAW  600
IDYSYSVNGG QAVAATSKKP AKKRAKPGES TRPRPKDRQL IQDRIKELRG IIPHNGKPLS  660
IDHLLEQTIK YLIFLQGVTK YADKIKQADE PKIIGNEDGM LPKHNMISGG ATWAFEVGAQ  720
SIPIVVKDLN PPGQMLIEML CEDQGFFLEI ANVIRGIGLN ILRAVMELQE DKIWARFIVE  780
AKEQVERTCI IWSLLPLLQQ TGGSGIDSAS QPSNDVNGGI PLSNNYLQPF PLPPLNMAET  840
FQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016741401.1	0.0	PREDICTED: transcription factor bHLH157-like
TrEMBL	A0A1U8NQZ5	0.0	A0A1U8NQZ5_GOSHI; transcription factor bHLH157-like
STRING	Gorai.003G076000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15615	4	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31280.1	7e-48	conserved peptide upstream open reading frame 7