PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A02G0944
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 398aa    MW: 44553.7 Da    PI: 7.9669
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A02G0944genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3102.91.7e-32101205199
                  EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE.. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefel 92 
                  f+kv tpsdv+k++rlv+pk++ae+h    ++ +e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD++ F++  g+ ++ +l
  Gh_A02G0944 101 FDKVVTPSDVGKLNRLVIPKQHAEKHfpldSSTNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIISFQRGvGElEKHRL 198
                  89***************************966778999*************************************************6669999999* PP

                  EEEEE-S CS
           B3  93 vvkvfrk 99 
                  ++ ++r+
  Gh_A02G0944 199 FIDWRRR 205
                  **99997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.0E-4292213IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.62E-3099204IPR015300DNA-binding pseudobarrel domain
CDDcd100172.04E-27100188No hitNo description
PROSITE profilePS5086314.565101206IPR003340B3 DNA binding domain
SMARTSM010193.4E-23101206IPR003340B3 DNA binding domain
PfamPF023627.7E-30101205IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MDFGFNEEGN KFPFSYSSSS SSPSSSSSQH KTQMAPPLSN TRWEAQAHQI HDGHHRQMST  60
NWLNNRYEPE EDNETATATA STEADSTLSA SAANIEKEQL FDKVVTPSDV GKLNRLVIPK  120
QHAEKHFPLD SSTNEKGLLL NFEDRNGKPW RFRYSYWNSS QSYVMTKGWS RFVKDKKLDA  180
GDIISFQRGV GELEKHRLFI DWRRRPDGPD PVSFHPHTHH LPLHRSNTPW SPLLMRPPPT  240
ARDRFQLSQI NPLNRNSYYG GFPTGNNVVN PGGTMGSVLF FRSAAAPTME WQQQPGVVVE  300
PIVFDSVPVV QGTGAAAAKR LRLFGVNMEC PIPESHNPEM LSTTTIPNTT MASQSPQLSS  360
SSQHPLQLRL YNGTPVLPPI DFLNANKGKA SLSLDFDI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-62962063114B3 domain-containing transcription factor NGA1
5os9_B2e-62962063114B3 domain-containing transcription factor NGA1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016741913.10.0PREDICTED: B3 domain-containing protein Os03g0120900-like isoform X1
RefseqXP_016741915.10.0PREDICTED: B3 domain-containing protein Os03g0120900-like isoform X2
SwissprotQ8LMR92e-74Y3209_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBLA0A1U8NV120.0A0A1U8NV12_GOSHI; B3 domain-containing protein Os03g0120900-like isoform X1
STRINGGorai.003G073600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13072899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.12e-72B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]