PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A02G0827
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRF
Protein Properties Length: 564aa    MW: 61301 Da    PI: 7.6117
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A02G0827genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.21.6e-24215259145
          WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                  d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e 
  Gh_A02G0827 215 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVEG 259
                  79****************************************985 PP
2QLQ59.97.4e-21144180137
          QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                  ++FT +Q+++L++Q+l+yKy+ an+P+P+ Ll +i+k
  Gh_A02G0827 144 GPFTSSQWMELEHQALIYKYMTANVPIPSTLLIPIRK 180
                  59*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.7E-11144180IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.3E-14145179IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.018145180IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.663215259IPR014977WRC domain
PfamPF088796.6E-21216258IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    Send to blast
MDFGVVGLEG IVGSETSNGF TLVASESETK QKLYGSAFLK QKRSGSNEDD WRSSKLAKFD  60
DISASKAVLS QHRNTLFRSN TSIFFDGQQQ QQMLSFSAPK LEALSMGRSS QNVIFPYFHL  120
TSPACTRNTG YNTGGFNGAN MNGGPFTSSQ WMELEHQALI YKYMTANVPI PSTLLIPIRK  180
ALDSAGFSSF SGGLLRPNTS VGWGAFHLGF SNNTDPEPGR CRRTDGKKWR CSRDAVADQK  240
YCERHMNRGR HRSRKPVEGQ SGRSTASTTT TTTKLMHSVS FSSASVVGPN GGNGESNSLT  300
IAEQQTAGES NLSHSGPLNR WLLNKESIGE RMHDTAPGNE FGVVSSESLL NPSHKSYSLI  360
KCINFGCSQD LDSQETESHR SVRQFFDGWP KTQSDCSSIF LPEADVQSDR TQLSISMPMA  420
LSDFMSSTSS PNNEDVTHSP LQLSRELDPI QMGLGVGSVG NETNWRQANW IPISRETSMG  480
GPLGEVLHSN NSSSAECKNS SALNLMTEKC DHSPRLGLSP TGVLQKTMFG WHSNSSAGSS  540
PRAENNKNDL LGSTIVHSSS LPAL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.27730.0boll| ovule
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0422963e-60KF042296.1 Codiaeum variegatum GRF2 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016741964.10.0PREDICTED: growth-regulating factor 1-like isoform X1
TrEMBLA0A1U8NVF30.0A0A1U8NVF3_GOSHI; growth-regulating factor 1-like isoform X1
STRINGGorai.005G098700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14542886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.17e-93growth-regulating factor 1