PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A02G0818

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 316aa MW: 35487 Da PI: 6.7758

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A02G0818	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.9	0.00032	217	239	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ Gh_A02G0818 217 WKCEKCSKIYAVQSDWKAHSKTC 239 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	6.6E-4	212	238	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MSVERSFEAW EEVQRHGQDL ADRLAQGFTG LIQSHMIPPS FPWPNPPKSK LFDLEFPSQS 60 FGNKDFGLPI DNSAIFDIGD IGNWIGQVGA DFGAGLNELV QQFFRRLPIS FRAEESAVVS 120 VRGDMSVKGQ KAEDFGFVGN ESHSEGVGDE EIPGFNLNSA GLLGRPQRKC DLKHPPGDEI 180 YRSGTLSMFE KFLSRKIYSV YFGTNTVYCR KHGEKKWKCE KCSKIYAVQS DWKAHSKTCG 240 TREYRCDCGT LFSRWVGYSK DSDDPFGRLV RITPGVGRFV ARSYSPRQLV SASPGIPLFE 300 IFVVKEDEET YLMQGA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-23	213	254	3	44	Zinc finger protein JACKDAW
5b3h_F	2e-23	213	254	3	44	Zinc finger protein JACKDAW
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.2410	1e-175	ovule

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017635054.1	1e-121	PREDICTED: uncharacterized protein LOC108477110
Refseq	XP_017635055.1	1e-121	PREDICTED: uncharacterized protein LOC108477110
TrEMBL	A0A2P5XDR6	1e-109	A0A2P5XDR6_GOSBA; Histone acetyltransferase
STRING	Gorai.013G174200.1	3e-89	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.2	1e-26	C2H2 family protein