PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A02G0523
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 605aa    MW: 67275.2 Da    PI: 4.624
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A02G0523genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS279.51e-852326032374
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalkl..fsevsPilkfshl 96 
                    lLl++Ae v  ++ e a++lL++   ++s++g+p+qR++ yf eAL++++ r ++ + +k+l+ ++  +++++ ++   ++   + ++P+ ++s++
  Gh_A02G0523 232 AALLLAAAEKVGYQQYESASRLLKQCDYMSSKTGNPVQRVVYYFSEALREKIEReTGRSSSKSLKWKPLCNYDTEMTALNPTVlaCHGAFPFGQVSQF 329
                  579***************************************************7777888888888887666333333333345899********** PP

         GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                  +  qaI+e v+++++vHiiD+ i++G+QW  L+qaLasR+       l+iT+v+    + k+ +  tg+rL++fA++lgvpf f+v++++++ dl+ +
  Gh_A02G0523 330 AGIQAIVENVAEANKVHIIDLAIKNGIQWTILIQALASRQheYRLELLKITAVAT---EAKDLIDGTGKRLSSFAQSLGVPFAFKVVMVSDMLDLKED 424
                  ****************************************5555679********...469999********************************** PP

         GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErell 290
                   ++++ +E+++   +++  ++l  +  +e+    ++k+++ ++P ++vv+e ea+hns+ F++rf+e l y+sa fd++++ + ++s++r  +E +++
  Gh_A02G0523 425 FFELDAEETIVSYAAFAFRSMLVAPNRIEN----IMKVLRVMNPCLMVVTEVEANHNSPIFVNRFIEVLFYFSAYFDCIATCMEQDSKNREILESVFF 518
                  ********************9966666666....**************************************************************** PP

         GRAS 291 greivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  g  i+n+va+eg++r+ r+ ++  Wr+ + + G+++++ls +   qa+l+l++++ +   +++ + ++l+ gWk+ p++s+S+W+
  Gh_A02G0523 519 GDGIRNMVAAEGTDRKVRNVKFDVWRAFFVRYGMEEAELSMSSKYQADLILKTFAcGTCCTLDMNGKCLLVGWKGTPMLSISVWK 603
                  *******************************************************9999*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.744205582IPR005202Transcription factor GRAS
PfamPF035143.5E-83232603IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 605 aa     Download sequence    Send to blast
MGNDVFSFGD LNVYGAPDKL SSSNNEFESF DGGNKGKAGG FYGVEDWGET GGIDSLPSDY  60
GFYGDASMGA SGFSFFKQDH HQLQQQQQQE QLSFIEYGLL NGVSFNAQSP LIQACFDEIA  120
ELGGINNGVY EDIGEAKKGK QYPGLSSLGL LNNYGNGFKR LNGERKTDDD ITVSDTQDED  180
RKLSTEEVMR VAGEMFLKSC GQTIDGISGI DHPFGLSFSG FSDRETRDIE LAALLLAAAE  240
KVGYQQYESA SRLLKQCDYM SSKTGNPVQR VVYYFSEALR EKIERETGRS SSKSLKWKPL  300
CNYDTEMTAL NPTVLACHGA FPFGQVSQFA GIQAIVENVA EANKVHIIDL AIKNGIQWTI  360
LIQALASRQH EYRLELLKIT AVATEAKDLI DGTGKRLSSF AQSLGVPFAF KVVMVSDMLD  420
LKEDFFELDA EETIVSYAAF AFRSMLVAPN RIENIMKVLR VMNPCLMVVT EVEANHNSPI  480
FVNRFIEVLF YFSAYFDCIA TCMEQDSKNR EILESVFFGD GIRNMVAAEG TDRKVRNVKF  540
DVWRAFFVRY GMEEAELSMS SKYQADLILK TFACGTCCTL DMNGKCLLVG WKGTPMLSIS  600
VWKFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-3823960226377Protein SCARECROW
5b3h_D1e-3823960226377Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.139284e-57boll
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6146098e-39JX614609.1 Gossypium hirsutum clone NBRI_GE58134 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017632663.10.0PREDICTED: DELLA protein RGL1-like
TrEMBLA0A1U8JJM60.0A0A1U8JJM6_GOSHI; DELLA protein RGL1-like
STRINGGorai.005G066300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM157861014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.13e-56RGA-like 2