PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A02G0514
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GATA
Protein Properties Length: 156aa    MW: 16972.4 Da    PI: 10.6102
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A02G0514genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.68.5e-193872135
         GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                 C+ Cgt+kTplWR gp g+k+LCnaCG++ rkk++
  Gh_A02G0514 38 CADCGTSKTPLWRGGPAGPKSLCNACGIRSRKKRR 72
                 ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577167.13E-133172No hitNo description
SMARTSM004015.1E-133283IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.8E-163672IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.46E-123772No hitNo description
PROSITE profilePS5011412.073868IPR000679Zinc finger, GATA-type
PfamPF003209.6E-173872IPR000679Zinc finger, GATA-type
PROSITE patternPS0034403863IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MLDPSEKGSS SEDQTKKSPE WISPKGSPNQ SIETKKVCAD CGTSKTPLWR GGPAGPKSLC  60
NACGIRSRKK RRAILGLNKG EDKKSKKGNI NGNSYNRKSS SSNTKNLGDN LKQRLLSLGK  120
EVLMQRSKVE KQRSKLGEEE QAAVLLMALS YGSVYA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.261910.0boll
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00335DAPTransfer from AT3G06740Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5273719e-45HQ527371.1 Gossypium herbaceum clone NBRI_B_EYI1BW404JXTVQ simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016720854.11e-108PREDICTED: GATA transcription factor 15-like
RefseqXP_017632852.11e-108PREDICTED: GATA transcription factor 15-like
RefseqXP_017632853.11e-108PREDICTED: GATA transcription factor 15-like
SwissprotQ8LG101e-48GAT15_ARATH; GATA transcription factor 15
TrEMBLA0A0B0NK291e-107A0A0B0NK29_GOSAR; GATA transcription factor 15-like protein
TrEMBLA0A1U8M5Q81e-107A0A1U8M5Q8_GOSHI; GATA transcription factor 15-like
TrEMBLA0A2P5XZV71e-107A0A2P5XZV7_GOSBA; Uncharacterized protein
STRINGGorai.005G065300.11e-107(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50502652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.14e-49GATA transcription factor 15
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  3. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]