PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A02G0182
Common NameHSF13
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HSF
Protein Properties Length: 495aa    MW: 55737.3 Da    PI: 5.3884
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A02G0182genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.71e-34251152101
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k+y++++d+++++++sws+n++sfvv+++ +fa+ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+         weF+++ F k++++ll++i+
   Gh_A02G0182  25 FLIKTYDMVDDSSTDDIVSWSSNKKSFVVWNPPDFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFANEDFVKDQRHLLKNIH 112
                   9****************************************************************999.........******************** PP

                   XXX CS
  HSF_DNA-bind  99 rkk 101
                   r+k
   Gh_A02G0182 113 RRK 115
                   *98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.5E-6021114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.31E-3521114IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.1E-3721114IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.4E-3025114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.5E-192548IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.5E-196375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.5E-197688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MDPTAPSASV VGGGCGGGGG GPAPFLIKTY DMVDDSSTDD IVSWSSNKKS FVVWNPPDFA  60
RLLLPTYFKH NNFSSFIRQL NTYGFRKIDP ERWEFANEDF VKDQRHLLKN IHRRKPIHSH  120
SNPQGSLIDH ERAGYEEEIE KLSREKAALE ADVLRSEQER SSLKHQVEEL TQQADQMERR  180
QETLFNFLEK ALQDPAFAEH LFRRIESMDD VAAYNKKRRL PQIDQTKPVG DHSILDNKSC  240
STPEFGNVVH LDFSNKLRLE LSSAVSEINL VSQSTQSSNE DEGSPQRRVS QGEPKDDNIR  300
PQGLLFTPKT LDISDTGTSF TFNMDSSFSQ RVSMNESPAL HSLQQRLSSS EEPDSHISCQ  360
LNLTLASSSL QVNKSPILTR MSQPSWEIGK VSESRSNANS KDSDSRPFHS RRNMIDGETT  420
LSSSKDGPNT NQEPTAAPVR VNDVFWEQFL TERPGSSDNE EASSNYRANP YEDQDDKRSG  480
HGLARNTKNI EQLSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B7e-211111416129Heat shock factor protein 1
5d5v_B7e-211111416129Heat shock factor protein 1
5d5v_D7e-211111416129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.198290.0boll| ovule
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7486160.0KJ748616.1 Gossypium hirsutum HSF13 (HSF13) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001314354.10.0heat stress transcription factor A-5-like
SwissprotQ94BZ51e-170HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBLA0A075QPU50.0A0A075QPU5_GOSHI; HSF13
STRINGGorai.005G027500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM101342433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.11e-172HSF family protein
Publications ? help Back to Top
  1. Reňák D,Gibalová A,Solcová K,Honys D
    A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein.
    Plant Cell Environ., 2014. 37(3): p. 670-83
    [PMID:23961845]