PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A02G0104

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GRAS

Protein Properties

Length: 914aa MW: 104991 Da PI: 5.7415

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A02G0104	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	37.8	2.8e-12	13	224	3	222
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfs.... 94 +lLl+cA+a+++gdl+ a+alL + +a + R+++yf+ AL +r ++ + + y+++p ++ P++ Gh_A02G0104 13 RLLLSCAKAIEDGDLKSADALLRFILVHADYRPyFYESRMVKYFADALVRRAYGlHPASSYNTFPGNP-------------------APYYHYNgyri 91 79*******************999998887757899************22222222222222...................33333330000 PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfe..fnvlvakrledle 190 + + + I +a+ g++r+H iDf+i + + l++L + +++p +R+ + +p ++ e + e L+k A +l+v++e +v++a++l++++ Gh_A02G0104 92 NDIIKKVIDDALMGNRRLHLIDFSIPYEDFDGSVLRTLPTFSGNPLPVRVSYILPPFLKKYVESFSQMEFLTKDAMNLNVKLEaeLKVVYANSLAEVD 189 333457888999999**********99*********99*****887755555555578******997226678999** PP GRAS 191 leeLrvkp...gEalaVnlvlqlhrlldesvsles 222 +L++k+ +E+++V ++lh+ll + ++e Gh_A02G0104 190 EYKLEFKRrreDEMVVVYYKFKLHKLLTDGKAMER 224 **99999**************88877765 PP
2	GRAS	24.2	3.7e-08	254	329	299	374
GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 a eg++ + rh+tl++W++ ++ aGF+ +pls++ + ++ +s + ee+++l+lg k+ p++++SaW+ Gh_A02G0104 254 ASEGNNIIRRHQTLSEWQRLFSIAGFTRIPLSHEKDDLIDFFFFDDGSFLEIMREEEECLILGYKECPMFFLSAWK 329 568888899**********************99988887766555333444599*****************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	10.069	1	367	IPR005202	Transcription factor GRAS
Pfam	PF03514	9.7E-10	13	224	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.3E-5	254	329	IPR005202	Transcription factor GRAS
PROSITE profile	PS50808	9.626	455	509	IPR003656	Zinc finger, BED-type
SMART	SM00614	7.0E-14	455	505	IPR003656	Zinc finger, BED-type
Pfam	PF02892	1.1E-5	458	498	IPR003656	Zinc finger, BED-type
SuperFamily	SSF57667	3.45E-6	458	507	No hit	No description
SuperFamily	SSF53098	1.44E-15	605	857	IPR012337	Ribonuclease H-like domain
Pfam	PF05699	5.0E-12	776	856	IPR008906	HAT, C-terminal dimerisation domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 914 aa Download sequence Send to blast
MASSPFDTDT ALRLLLSCAK AIEDGDLKSA DALLRFILVH ADYRPYFYES RMVKYFADAL 60 VRRAYGLHPA SSYNTFPGNP APYYHYNGYR INDIIKKVID DALMGNRRLH LIDFSIPYED 120 FDGSVLRTLP TFSGNPLPVR VSYILPPFLK KYVESFSQME FLTKDAMNLN VKLEAELKVV 180 YANSLAEVDE YKLEFKRRRE DEMVVVYYKF KLHKLLTDGK AMERELYYSN TCTFWCRYDI 240 LIYLKYEWEC NRDASEGNNI IRRHQTLSEW QRLFSIAGFT RIPLSHEKDD LIDFFFFDDG 300 SFLEIMREEE ECLILGYKEC PMFFLSAWKP EVEDGHFNSI STNHQFGQGF NPNPLPLQPL 360 QPFLQFQEEA ISSIPTSSNT AMPLKIAEEA RNIDAIEING HIKQGVVPNF DSPISIHSSS 420 KVVAVPFNTL EGPYNQIIFN DDSQIEKTKG NKQRKSWSKV WVDFDKFEED GKQVAKCKHC 480 PKVLTGSSKS GTTHLNNHSK VCPGKKKQNQ ETQLILPADT NERSSTFDQE RSHLDLVKMV 540 IKHQYPLDLA GQEAFKNFVK GLQPMYEFQS IEKLLSDFYK EKKREVRQGF DKLASHWFIS 600 CTFLEDGSRE MCSILHKFRE SIEYVTETTH GRLKFQEAVD QVKLQGGKSL DDLSFKLESE 660 FDILTSALKS REIFCQLEQI DGNFKLNPSM EEWEKAIALK SCLKCFNDIK GTQSITMQLN 720 EFHKVLTNVY CKYTNGARNS IASTSILDDS NSLTTETTND CILDSFNNFL PSWKSELEDY 780 LGESEPALPL DGDILGWWRV NSLRFPTLAK MARDHLATLV SVSMPCSVVG AMITHSSYNS 840 LDPDSMEALV CSQNWLETLK ENEGENHELT QNTEKRKRKM DEEDTYVVKS FKPSNCGKAN 900 STKDIAKDSN NNGN

Sequence ? help Back to Top

Protein Sequence Length: 914 aa Download sequence Send to blast

MASSPFDTDT ALRLLLSCAK AIEDGDLKSA DALLRFILVH ADYRPYFYES RMVKYFADAL  60
VRRAYGLHPA SSYNTFPGNP APYYHYNGYR INDIIKKVID DALMGNRRLH LIDFSIPYED  120
FDGSVLRTLP TFSGNPLPVR VSYILPPFLK KYVESFSQME FLTKDAMNLN VKLEAELKVV  180
YANSLAEVDE YKLEFKRRRE DEMVVVYYKF KLHKLLTDGK AMERELYYSN TCTFWCRYDI  240
LIYLKYEWEC NRDASEGNNI IRRHQTLSEW QRLFSIAGFT RIPLSHEKDD LIDFFFFDDG  300
SFLEIMREEE ECLILGYKEC PMFFLSAWKP EVEDGHFNSI STNHQFGQGF NPNPLPLQPL  360
QPFLQFQEEA ISSIPTSSNT AMPLKIAEEA RNIDAIEING HIKQGVVPNF DSPISIHSSS  420
KVVAVPFNTL EGPYNQIIFN DDSQIEKTKG NKQRKSWSKV WVDFDKFEED GKQVAKCKHC  480
PKVLTGSSKS GTTHLNNHSK VCPGKKKQNQ ETQLILPADT NERSSTFDQE RSHLDLVKMV  540
IKHQYPLDLA GQEAFKNFVK GLQPMYEFQS IEKLLSDFYK EKKREVRQGF DKLASHWFIS  600
CTFLEDGSRE MCSILHKFRE SIEYVTETTH GRLKFQEAVD QVKLQGGKSL DDLSFKLESE  660
FDILTSALKS REIFCQLEQI DGNFKLNPSM EEWEKAIALK SCLKCFNDIK GTQSITMQLN  720
EFHKVLTNVY CKYTNGARNS IASTSILDDS NSLTTETTND CILDSFNNFL PSWKSELEDY  780
LGESEPALPL DGDILGWWRV NSLRFPTLAK MARDHLATLV SVSMPCSVVG AMITHSSYNS  840
LDPDSMEALV CSQNWLETLK ENEGENHELT QNTEKRKRKM DEEDTYVVKS FKPSNCGKAN  900
STKDIAKDSN NNGN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016714017.1	0.0	PREDICTED: uncharacterized protein LOC107927468 isoform X3
TrEMBL	A0A2P5PYM1	0.0	A0A2P5PYM1_GOSBA; Uncharacterized protein
STRING	Gorai.005G015100.1	1e-159	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8809	4	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14920.1	3e-20	GRAS family protein