PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A02G0103

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GRAS

Protein Properties

Length: 1595aa MW: 184848 Da PI: 6.3947

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A02G0103	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	100.1	3.3e-31	11	364	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 +lLl+cA+a++ gdl+ a+a+L+++ la ++ R+++yf+ AL +r +r l+p +++ + +++ +++ + ++ i + + Gh_A02G0103 11 RLLLSCAKAIEVGDLKSADAFLQNIWILADERPyLYKSRVVKYFADALVRRAYR--------LHPASSNLTFHVDPASY--YHYDSNRINGVIENVIH 98 79************************9999867999************........55555553345555555..46778888888889999 PP GRAS 100 qaIle..avegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpf..efnvlvakrledlelee 193 a++e a+ g++r+H iDf+i + + l++L + +++pp +R+ + +p ++ ++ e L++ A+ ++v++ ef+v++a++l++++ e Gh_A02G0103 99 GALMEktALMGNRRLHLIDFSIPYYCFQNSVLRTLPTFSGDPPPVRVSYILPPFLKKYVDFSRQMEFLTRDAKGVNVKLedEFKVVYANSLAEVDECE 196 999884467899******876666899*****************99999999999999*******99545************ PP GRAS 194 Lrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpreseerikvEr 287 +++k+ +E+++V ++l +l+++ ++e L +k+++P++v++ + ++h++++Fl+ f ++l y + d + e l + +E Gh_A02G0103 197 IDFKRrreDEMVVVYYKFKLDKLVRDAKAMER----ELVRLKEINPTIVIMLDFYSNHTHSNFLTCFKDSLLYSLKTVDWWwELDL----YFDDEYEW 286 99999*************99888888....8999************************************977775....33333444 PP GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 e +n+ a eg++ + rh tl +W++ +++aGF+ +pl+++ a + l+ k++ + ee+++l+lg k+ +++ +SaW+ Gh_A02G0103 287 E------CNIEAWEGNNVIRRHPTLTEWQHLFSMAGFSRIPLNHRKAID---LIDKFDRFVKIMGEEEECLILGYKECRMFILSAWK 364 4......788899*************************9887655...666666222345699*****************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	21.369	1	347	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.1E-28	11	364	IPR005202	Transcription factor GRAS
SMART	SM00614	3.6E-20	635	685	IPR003656	Zinc finger, BED-type
PROSITE profile	PS50808	12.027	635	689	IPR003656	Zinc finger, BED-type
Pfam	PF02892	5.9E-11	638	683	IPR003656	Zinc finger, BED-type
SuperFamily	SSF57667	1.07E-8	638	687	No hit	No description
SuperFamily	SSF53098	2.96E-39	767	1220	IPR012337	Ribonuclease H-like domain
Pfam	PF14372	1.4E-15	997	1087	IPR025525	hAT-like transposase, RNase-H fold
Pfam	PF05699	6.0E-18	1138	1219	IPR008906	HAT, C-terminal dimerisation domain
SuperFamily	SSF54001	4.71E-12	1427	1569	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 1595 aa Download sequence Send to blast
MASSFSHTAL RLLLSCAKAI EVGDLKSADA FLQNIWILAD ERPYLYKSRV VKYFADALVR 60 RAYRLHPASS NLTFHVDPAS YYHYDSNRIN GVIENVIHGA LMEKTALMGN RRLHLIDFSI 120 PYYCFQNSVL RTLPTFSGDP PPVRVSYILP PFLKKYVDFS RQMEFLTRDA KGVNVKLEDE 180 FKVVYANSLA EVDECEIDFK RRREDEMVVV YYKFKLDKLV RDAKAMEREL VRLKEINPTI 240 VIMLDFYSNH THSNFLTCFK DSLLYSLKTV DWWWELDLYF DDEYEWECNI EAWEGNNVIR 300 RHPTLTEWQH LFSMAGFSRI PLNHRKAIDL IDKFDRFVKI MGEEEECLIL GYKECRMFIL 360 SAWKPKVEEE HLNFNSSNDK FGLGFNPYPS PLPPLQPFPE GLALNRVAVI PEIHDILNHL 420 HCEHKFSSAL TWASKVNNMN ETISDPNKYT FSIQSNSCYL KDFKSHLFMH LCEDKIKQTI 480 IEKAIESKDG YHCEPSITNL DGEDNPYPVD VKKYDIDVVV AICLQNRYTN NDLYVVEFYW 540 PATESKTSKS FAPHIFNDFK HMEKKFVTVK VEGTQKAISN IPTSSNTARH LKIAEETEDV 600 DAVEINGVNV EIFPNGHPEI VKAIKEKPSK ATQRKLRSKV WDHFDRFEED GKQVAKCKHC 660 PKVLTGSSKS GTTHLNNHLK VCPGKKKQNQ ESQLILPVDT NEGSLRFDKK RSHMDLVKMM 720 IKLQCPLDMA EQETFKNFLK GLQPMFEFQS KDILSYRHRI YDEEKEKHQL YFDKLASKFN 780 LTVSLWKNNS GKTTYCSLTS HFIDDGWELK RKILALKTLE HINDTKALGE IIGSLVLEWN 840 ISNKVCSITV DNSFLNDSMV DQIKEICLSD QGSVSSNHWF ISFTLLEDGF REMDGILFKL 900 RKSIEYVTET RQGKLKCQEA VDQVKLHGGK YWDDLSFRLE SDFDVLDSAL RSREIFCKLE 960 QIDENFKLNP TMEEWENAVA LQSCLKCFDD IKGSQCLPVS LYFPKLCDIY KKFLQLEKSC 1020 HSFVTLMKRK FDHYWSLCNS AFAVASVLDP RLKFKIVELS YRVIYGHVSK MQLNKFHKVL 1080 RDVYYKYASE AKSLTTSASV FDDFDCSTIG LGNDSILDSL SKFASASNFN EEAPWKLELE 1140 LYLDEPLLPM DGAFFDILGW WCDKSQRFPI LAKMARDFLA IPISVSTPCS SISAIINNPA 1200 YSSLNPESME ALVCSENWLE TPKENDGENH EPMQITDKRK RKMDEEDSHP VKNSKPSNLE 1260 KAINTEDIAK DSNNNDFSLS FDNWMEPQFS SSESIGEKAE IMKALVCNEN RLESSIGKPN 1320 HEKNVDVVIE IVNNDPLFDI NQSDEVQSSS SESEDEATLK EQGPWCEQDI KAYLLSRFTS 1380 KEHKRLDKWQ RNELNGKLIG RDKKFKFQGE ILAPLLMVPQ SDETRKECYI NDSVVNAFFE 1440 LLKKRSDEFS NTYINHYSFD SQIAAQLIKG CRSELEVLNW FKAEKLRGVH KLFLLLCLSS 1500 HWVLFYVDIK EKKFSWLDPD PSSLIQSYHF ENHVKVLLQW FTSFLLPKLG YSDANKWPFI 1560 VRNDIPKQKK NLRQLWGLKF WLSSLFSPSE VEVGV

Sequence ? help Back to Top

Protein Sequence Length: 1595 aa Download sequence Send to blast

MASSFSHTAL RLLLSCAKAI EVGDLKSADA FLQNIWILAD ERPYLYKSRV VKYFADALVR  60
RAYRLHPASS NLTFHVDPAS YYHYDSNRIN GVIENVIHGA LMEKTALMGN RRLHLIDFSI  120
PYYCFQNSVL RTLPTFSGDP PPVRVSYILP PFLKKYVDFS RQMEFLTRDA KGVNVKLEDE  180
FKVVYANSLA EVDECEIDFK RRREDEMVVV YYKFKLDKLV RDAKAMEREL VRLKEINPTI  240
VIMLDFYSNH THSNFLTCFK DSLLYSLKTV DWWWELDLYF DDEYEWECNI EAWEGNNVIR  300
RHPTLTEWQH LFSMAGFSRI PLNHRKAIDL IDKFDRFVKI MGEEEECLIL GYKECRMFIL  360
SAWKPKVEEE HLNFNSSNDK FGLGFNPYPS PLPPLQPFPE GLALNRVAVI PEIHDILNHL  420
HCEHKFSSAL TWASKVNNMN ETISDPNKYT FSIQSNSCYL KDFKSHLFMH LCEDKIKQTI  480
IEKAIESKDG YHCEPSITNL DGEDNPYPVD VKKYDIDVVV AICLQNRYTN NDLYVVEFYW  540
PATESKTSKS FAPHIFNDFK HMEKKFVTVK VEGTQKAISN IPTSSNTARH LKIAEETEDV  600
DAVEINGVNV EIFPNGHPEI VKAIKEKPSK ATQRKLRSKV WDHFDRFEED GKQVAKCKHC  660
PKVLTGSSKS GTTHLNNHLK VCPGKKKQNQ ESQLILPVDT NEGSLRFDKK RSHMDLVKMM  720
IKLQCPLDMA EQETFKNFLK GLQPMFEFQS KDILSYRHRI YDEEKEKHQL YFDKLASKFN  780
LTVSLWKNNS GKTTYCSLTS HFIDDGWELK RKILALKTLE HINDTKALGE IIGSLVLEWN  840
ISNKVCSITV DNSFLNDSMV DQIKEICLSD QGSVSSNHWF ISFTLLEDGF REMDGILFKL  900
RKSIEYVTET RQGKLKCQEA VDQVKLHGGK YWDDLSFRLE SDFDVLDSAL RSREIFCKLE  960
QIDENFKLNP TMEEWENAVA LQSCLKCFDD IKGSQCLPVS LYFPKLCDIY KKFLQLEKSC  1020
HSFVTLMKRK FDHYWSLCNS AFAVASVLDP RLKFKIVELS YRVIYGHVSK MQLNKFHKVL  1080
RDVYYKYASE AKSLTTSASV FDDFDCSTIG LGNDSILDSL SKFASASNFN EEAPWKLELE  1140
LYLDEPLLPM DGAFFDILGW WCDKSQRFPI LAKMARDFLA IPISVSTPCS SISAIINNPA  1200
YSSLNPESME ALVCSENWLE TPKENDGENH EPMQITDKRK RKMDEEDSHP VKNSKPSNLE  1260
KAINTEDIAK DSNNNDFSLS FDNWMEPQFS SSESIGEKAE IMKALVCNEN RLESSIGKPN  1320
HEKNVDVVIE IVNNDPLFDI NQSDEVQSSS SESEDEATLK EQGPWCEQDI KAYLLSRFTS  1380
KEHKRLDKWQ RNELNGKLIG RDKKFKFQGE ILAPLLMVPQ SDETRKECYI NDSVVNAFFE  1440
LLKKRSDEFS NTYINHYSFD SQIAAQLIKG CRSELEVLNW FKAEKLRGVH KLFLLLCLSS  1500
HWVLFYVDIK EKKFSWLDPD PSSLIQSYHF ENHVKVLLQW FTSFLLPKLG YSDANKWPFI  1560
VRNDIPKQKK NLRQLWGLKF WLSSLFSPSE VEVGV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	708	712	KKRSH

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	72278395	1e-180

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX583793	1e-39	JX583793.1 Gossypium hirsutum clone NBRI_GE16930 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016714046.1	0.0	PREDICTED: uncharacterized protein LOC107927488 isoform X1
TrEMBL	A0A1U8LHG1	0.0	A0A1U8LHG1_GOSHI; uncharacterized protein LOC107927488 isoform X1
STRING	Gorai.005G031000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8809	4	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14920.1	2e-32	GRAS family protein