PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A01G2114

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 538aa MW: 58832.6 Da PI: 8.6832

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A01G2114	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.3	2.7e-05	38	60	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H Gh_A01G2114 38 FICEVCNKGFQREQNLQLHRRGH 60 89*******************88 PP
2	zf-C2H2	13.3	0.00025	114	136	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ Gh_A01G2114 114 WKCEKCSKRYAVQSDWKAHSKTC 136 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	5.9E-6	37	60	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.77E-7	37	60	No hit	No description
SMART	SM00355	0.0052	38	60	IPR015880	Zinc finger, C2H2-like
Pfam	PF12171	2.6E-5	38	60	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	10.99	38	60	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	40	60	IPR007087	Zinc finger, C2H2
SMART	SM00355	130	79	109	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.9E-5	102	135	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.77E-7	109	134	No hit	No description
SMART	SM00355	130	114	134	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 538 aa Download sequence Send to blast
MRFGFLSECP MGERVMVANP DVEVIALSPK SLMATNRFIC EVCNKGFQRE QNLQLHRRGH 60 NLPWKLRQKT TKEVKRKVYL CPEPTCVHHD PSRALGDLTG IKKHYSRKHG EKKWKCEKCS 120 KRYAVQSDWK AHSKTCGTRE YRCDCGTLFS RRDSFITHRA FCDALAQENA RQPPSFNSIG 180 NHLYGSTSNI CLGLSQVGTQ MSSVQDQANN NSGGRDIFKL GGVARSTQFD HLLLSPSMGS 240 SSSSSFRPQQ SIVSSAAFFM PESNQEHHPQ QGILGNNKQY HQGLMMQFPA DIQNNTTNTP 300 SPPSFFNLSF LSNCGNDINL DANLTSSGLL TPEHFDNETG GGGGGTSEVS DPFSNTVMGN 360 QITTNIPSVF AQSNNIAVQM SATALLQKAA QMGSTSSYKN ASLMRSFGNS KFGGTLGDST 420 GNNLHELMNS IAGGRSNTYS FGHGQENPYA NRSSVEQEKH LEQQPQILNV SGGCGSDRLT 480 RDFLGVGQIV RSMSMGGVSQ REQQQQQQAM GLSALGSERS NITAPTNHQC LGGNGNFQ

Sequence ? help Back to Top

Protein Sequence Length: 538 aa Download sequence Send to blast

MRFGFLSECP MGERVMVANP DVEVIALSPK SLMATNRFIC EVCNKGFQRE QNLQLHRRGH  60
NLPWKLRQKT TKEVKRKVYL CPEPTCVHHD PSRALGDLTG IKKHYSRKHG EKKWKCEKCS  120
KRYAVQSDWK AHSKTCGTRE YRCDCGTLFS RRDSFITHRA FCDALAQENA RQPPSFNSIG  180
NHLYGSTSNI CLGLSQVGTQ MSSVQDQANN NSGGRDIFKL GGVARSTQFD HLLLSPSMGS  240
SSSSSFRPQQ SIVSSAAFFM PESNQEHHPQ QGILGNNKQY HQGLMMQFPA DIQNNTTNTP  300
SPPSFFNLSF LSNCGNDINL DANLTSSGLL TPEHFDNETG GGGGGTSEVS DPFSNTVMGN  360
QITTNIPSVF AQSNNIAVQM SATALLQKAA QMGSTSSYKN ASLMRSFGNS KFGGTLGDST  420
GNNLHELMNS IAGGRSNTYS FGHGQENPYA NRSSVEQEKH LEQQPQILNV SGGCGSDRLT  480
RDFLGVGQIV RSMSMGGVSQ REQQQQQQAM GLSALGSERS NITAPTNHQC LGGNGNFQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-34	110	171	3	64	Zinc finger protein JACKDAW
5b3h_F	2e-34	110	171	3	64	Zinc finger protein JACKDAW
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.22861	0.0	boll

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Highly expressed in leaf tissues. {ECO:0000305\|PubMed:22898356}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269\|PubMed:22898356, ECO:0000269\|PubMed:24821766}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX614588	0.0	JX614588.1 Gossypium hirsutum clone NBRI_GE58088 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016708025.1	0.0	PREDICTED: protein indeterminate-domain 5, chloroplastic-like isoform X1
Swissprot	Q9ZUL3	1e-126	IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBL	A0A1U8L014	0.0	A0A1U8L014_GOSHI; protein indeterminate-domain 5, chloroplastic-like isoform X1
STRING	Gorai.002G169100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4373	26	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02070.1	1e-110	indeterminate(ID)-domain 5

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]