PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A01G1982

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 180aa MW: 20310.2 Da PI: 9.5978

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A01G1982	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	20.9	7.9e-07	80	116	5	41
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeae 41 k+ +r++ NR +A++sR+R+ +++++Le+k++ Lea Gh_A01G1982 80 KKLKRLIANRASAQKSRLRRVEYVDKLEKKAEFLEAT 116 899******************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	6.3E-9	76	140	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.864	78	141	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	6.0E-8	80	116	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.3E-9	80	145	No hit	No description
SuperFamily	SSF57959	3.26E-8	80	134	No hit	No description
CDD	cd14703	4.36E-11	81	132	No hit	No description
PROSITE pattern	PS00036	0	83	98	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
MDPKNETSPN AADNQMLNPN AENEDLTLPL ESIQPLHKRS ASDSLAFVKE PYWHAPSSSA 60 QGRLLGGAAG SSSASHMDPK KLKRLIANRA SAQKSRLRRV EYVDKLEKKA EFLEATASLV 120 SPRVTSERKK RMMLLKENAE LKQKIEFYDK LLEKQDAEYK ALKEERDLLS FTNLLIQEGI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016749231.1	1e-128	PREDICTED: basic leucine zipper 19-like isoform X1
TrEMBL	A0A1U8PDG8	1e-127	A0A1U8PDG8_GOSHI; basic leucine zipper 19-like isoform X1
STRING	Gorai.002G265300.1	1e-112	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM18651	6	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42380.2	2e-17	bZIP family protein