![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gh_A01G1901 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 146aa MW: 16089.8 Da PI: 5.6352 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.5 | 2.4e-05 | 30 | 52 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k Fs+ L H++ H Gh_A01G1901 30 YTCSFCKKGFSNAQALGGHMNIH 52 9********************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.21E-7 | 26 | 56 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 7.1E-6 | 28 | 54 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.572 | 30 | 57 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0042 | 30 | 52 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 32 | 52 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 146 aa Download sequence Send to blast |
METKHPKLEK PDQIVWSLEE EDVSVHSKSY TCSFCKKGFS NAQALGGHMN IHRKDRAKLR 60 ESFEENVLSS DITLDRVQVQ VQDRYLISEI ILESSGEKKV SRDDNGSGAS PKGKDGVGEN 120 SGSSHGSSSQ VELDLELRLG PDSRAS |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Preferentially expressed in roots and flowers. Slightly expressed in leaves and stems. {ECO:0000269|PubMed:15486103}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Activation factor which mediates telomerase activity and potentiates responses to auxin through the regulation of BT2. Binds in vitro to the DNA sequence 5'-GACAGTGTTAC-3' of the BT2 promoter. {ECO:0000269|PubMed:15486103, ECO:0000269|PubMed:17220202}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016752485.1 | 1e-103 | PREDICTED: transcriptional regulator TAC1-like | ||||
Refseq | XP_017622137.1 | 1e-103 | PREDICTED: transcriptional regulator TAC1-like | ||||
Swissprot | Q9SR34 | 3e-18 | TAC1_ARATH; Transcriptional regulator TAC1 | ||||
TrEMBL | A0A1U8PMT2 | 1e-102 | A0A1U8PMT2_GOSHI; transcriptional regulator TAC1-like | ||||
TrEMBL | A0A2P5W1B0 | 1e-102 | A0A2P5W1B0_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.002G256500.1 | 5e-84 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6991 | 23 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G53820.1 | 6e-18 | C2H2 family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|