PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A01G1709
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 396aa    MW: 44407.2 Da    PI: 8.9524
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A01G1709genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.24.5e-11211071390
                  TT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
           B3  13 sgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                  s+rl +p ++++           +g+++e  + +++de+gr+W++ +++rk++++   vl + W +Fv++++L+egD v+++ ++++++
  Gh_A01G1709  21 SRRLAVPMEYFNMEqfpkpgaslEGNPRE--DFVVKDEKGRVWNLSCSIRKQPNHpkPVLINEWIHFVQSKKLREGDRVIIYGEQDETG 107
                  45677777776444667777777778777..69****************9999999999999********************8777666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508638.9669117IPR003340B3 DNA binding domain
SuperFamilySSF1019361.08E-109110IPR015300DNA-binding pseudobarrel domain
CDDcd100171.92E-1210100No hitNo description
Gene3DG3DSA:2.40.330.101.1E-1510122IPR015300DNA-binding pseudobarrel domain
PfamPF023621.2E-821109IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MVILELPMII LEKSLSKTDI SRRLAVPMEY FNMEQFPKPG ASLEGNPRED FVVKDEKGRV  60
WNLSCSIRKQ PNHPKPVLIN EWIHFVQSKK LREGDRVIIY GEQDETGLMQ LRIKAEKCTG  120
SYEAPCFPFM NQNPDRYKGL SSHSSSSEST ATFQPSETED HSAEVLSHEL GQTTATTTPG  180
IYKERIPTTN STSQDIARYK MKRPRLSSSL ELTLKPTTTE YHLADVLKHE LGRTTAARTP  240
SITKEHIPTN RSTSQDIARY KKKGPRLSTS LELTLKPTTA EYLLADVLNH ELNQITATTT  300
PSINKEHIPT NHSTSQDIAR HKTKGPRLNP SLELTLKPAT TEGMTAATSS SIDKNLAPTF  360
HSHSQDIGTY NTETPNLSLN LGLTLKPTYM QDTTHK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2P5Y8W70.0A0A2P5Y8W7_GOSBA; Uncharacterized protein
STRINGGorai.002G234300.11e-138(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2208034