PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A01G1676
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 253aa    MW: 28240.2 Da    PI: 8.3334
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A01G1676genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.00097188210223
                  EETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                  +Cp C   Fs+   L+ H ++ H
  Gh_A01G1676 188 ECPQCRVKFSSVTALVEHVKKvH 210
                  5*******************999 PP
2zf-C2H218.84.5e-06225247223
                  EETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                  +Cp+Cg+ F+++ +L+ H  + H
  Gh_A01G1676 225 VCPKCGRGFRDPVSLVEHVEKdH 247
                  7*****************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183103.14E-12650No hitNo description
PROSITE profilePS510397.261059IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.102.2E-91150IPR000058Zinc finger, AN1-type
PfamPF014289.6E-131350IPR000058Zinc finger, AN1-type
SMARTSM001540.0291352IPR000058Zinc finger, AN1-type
SuperFamilySSF1183102.35E-993144No hitNo description
Gene3DG3DSA:4.10.1110.108.9E-995145IPR000058Zinc finger, AN1-type
PROSITE profilePS510397.74598146IPR000058Zinc finger, AN1-type
PfamPF014287.1E-8101141IPR000058Zinc finger, AN1-type
SMARTSM001540.037101142IPR000058Zinc finger, AN1-type
SMARTSM003550.018187210IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.265187215IPR007087Zinc finger, C2H2
PfamPF138940.0011188210No hitNo description
SuperFamilySSF576677.55E-5188243No hitNo description
PROSITE patternPS000280189210IPR007087Zinc finger, C2H2
PROSITE profilePS501579.577224252IPR007087Zinc finger, C2H2
SMARTSM003554.3224247IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280226247IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MGTPEFPDLG RHCSVQHCKQ IDFLPFTCDR CDLSYCLEHR SYIKHQCSKA GNNDVTVVIC  60
PLCAKGVRLI PNEDPNISWE THVNTECDPS NYDKVIKKMK CPVSRCKEVL TFSNTIKCKD  120
CSVDHCLKHR FGLDHDCPGP KKPATTSSSF WATSLLNVAS SFRENRQVAR DGAGLRRSSS  180
GSAGQMEECP QCRVKFSSVT ALVEHVKKVH ERNNQSRVLK MSIDVCPKCG RGFRDPVSLV  240
EHVEKDHGGT SKA
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2431270.0AC243127.1 Gossypium raimondii clone GR__Ba0222F01-hob, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016707180.10.0PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
SwissprotQ8VZ421e-112SAP11_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
TrEMBLA0A1U8KXM50.0A0A1U8KXM5_GOSHI; zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
STRINGGorai.002G230400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39082754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-109C2H2 family protein