 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Gh_A01G1555 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
| Family |
LBD |
| Protein Properties |
Length: 221aa MW: 24485.3 Da PI: 9.0973 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gh_A01G1555 | genome | NAU-NBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 94.2 | 1.5e-29 | 4 | 108 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93
+C++C+vlr++C+++C+++p++ p++q++++ +++k++G + +l+l++a pe+ r++++ sl+yeA+ r+ +PvyG+vg++++ ++ +q++++
Gh_A01G1555 4 SCNGCRVLRKGCSQNCIIRPCLqwiksPDSQANATLFLAKFYGLAGLLNLIEAGPENLRPAIFMSLLYEACGRVVNPVYGSVGMLWSRNWVECQAAVD 101
6***********************************************************************************************99 PP
DUF260 94 lallkee 100
++l +++
Gh_A01G1555 102 AVLKGSQ 108
9988776 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 221 aa
Download sequence Send
to blast |
MRMSCNGCRV LRKGCSQNCI IRPCLQWIKS PDSQANATLF LAKFYGLAGL LNLIEAGPEN 60
LRPAIFMSLL YEACGRVVNP VYGSVGMLWS RNWVECQAAV DAVLKGSQIT ETSSSESLTQ 120
QSISPLKTYD IRHVFKDPNT TDIDKVKSRN SFKRSATKSK RHVDSKEDES MFSVETQEGS 180
LVTQTKKGPL LKLGNQTVEI ADIRLELTLG LAPATMQLPR L
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | JX585561 | 8e-80 | JX585561.1 Gossypium hirsutum clone NBRI_GE19169 microsatellite sequence. |
