PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Expression |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Gh_A01G1536

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Protein Properties

Length: 131aa MW: 15251.7 Da PI: 10.374

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A01G1536	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	44	4e-14	16	98	14	90
T-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS B3 14 grlvlpkkfaeeh....ggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 +r+ +p k + ++ +g+ e ++ ++de gr+W++++ ++k ++ vltkGW+eFv ++L D v F++d++ ++ Gh_A01G1536 16 KRMKIPSKSL-NCfpalSGN-EHMVDFDVRDECGRVWKFRIYTrksNNKYRKPVLTKGWREFVCRKELSIDDEVEFYMDKQqADG 98 5799999999.445998555.46689*************444445555559**********************88654444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	9.136	3	110	IPR003340	B3 DNA binding domain
CDD	cd10017	1.35E-13	4	93	No hit	No description
Gene3D	G3DSA:2.40.330.10	8.0E-16	4	95	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.77E-13	6	93	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	7.0E-11	16	97	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 131 aa Download sequence Send to blast
MATIVSKRLR KTDIEKRMKI PSKSLNCFPA LSGNEHMVDF DVRDECGRVW KFRIYTRKSN 60 NKYRKPVLTK GWREFVCRKE LSIDDEVEFY MDKQQADGSV EYRVTVQKAV KVFGAVFAHK 120 PFPGKVSNGI V

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.3589	1e-170	ovule

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	73861228	1e-170

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012467821.1	3e-89	PREDICTED: B3 domain-containing transcription factor NGA4-like
TrEMBL	A0A2P5WTA7	8e-93	A0A2P5WTA7_GOSBA; Uncharacterized protein
STRING	Gorai.002G215500.1	1e-88	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16920	5	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01500.1	4e-10	B3 family protein