PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A01G1520
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family M-type_MADS
Protein Properties Length: 581aa    MW: 64796.6 Da    PI: 5.8267
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A01G1520genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF71.66.6e-23350249
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                 +i+++sn qvtfskRr g++KKA+EL++LC++e+a+i+fs+ +k++ +
  Gh_A01G1520  3 KIKDESNLQVTFSKRRSGLFKKASELCTLCGVEIAIIVFSPGNKVFSF 50
                 69******************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd002652.64E-29168No hitNo description
SMARTSM004321.6E-24153IPR002100Transcription factor, MADS-box
PROSITE profilePS5006621.376154IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.41E-24267IPR002100Transcription factor, MADS-box
PfamPF003194.1E-25350IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-91631IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-93152IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    Send to blast
MAKIKDESNL QVTFSKRRSG LFKKASELCT LCGVEIAIIV FSPGNKVFSF GHPDVENILN  60
RYVHNTKDTS PTWQLIEAHR NAIILRLNAQ LTEMMSQIEA QKKRGEELDK MRKASQEQNW  120
WESPIEELSL PQLQFLRSAM AELKKIVQRE AEQLIIQNTN CQQLFPGSSS QGTNTNSKQF  180
FIGSSSQEMD TNRQQFFPGS SSQGMDTNPQ QFFSTGSSSQ GMDTNPQQFF TGSSSQGMDT  240
NPQHPPQFFT PPQHPPQFFT RSSSQGMDTN PFTGSSIQGM DTNLQHPPQL FTGSSIQGMD  300
TNPQLFNEKS SQGMDTNPQH PPQFFTGSSI QGMDTNPQHF FTRSSSQGMD TNPQHPPQFF  360
TGSSIQGTDT NPQQFFTRSS IQRMDTNPQQ LFPEKSSQGM DTNPQQFFTG SSIQGMDRNP  420
RQLFPEKSSQ GMDTNPQRFF TGRSIQGMDT NPQQFFTRTS IQGMDRNPRQ LFPEKSSQGM  480
DTNPQQFFTG SSIQGMDRSP SLFFIGSSSQ GGTPNYETMN NNMAFNANMM GGEYIDPNMI  540
APTPNYNPNP PAEGHINPNP EGSDILAPTS PTSPGFGRGL F
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017647584.10.0PREDICTED: myocyte-specific enhancer factor 2A-like
TrEMBLA0A2P5Y3900.0A0A2P5Y390_GOSBA; Uncharacterized protein
STRINGGorai.002G213500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2474734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-54AGAMOUS-like 62