PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Gh_A01G1026

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HD-ZIP

Protein Properties

Length: 255aa MW: 28484.1 Da PI: 8.1123

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A01G1026	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61	1.9e-19	106	160	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk+q +Le+ F+++ ++ ++++ LA+kl+L rqV vWFqNrRa+ k Gh_A01G1026 106 RKKLRLTKHQSAILEDSFKEHTTLCPKQKQALAAKLDLRPRQVEVWFQNRRARTK 160 78889************************************************98 PP
2	HD-ZIP_I/II	119.1	2.4e-38	106	194	1	89
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rl+k+q+++LE+sF+e+++L p++K++la +L+l+prqv+vWFqnrRARtk+kq+E+d+e Lk+++++l+een+rL++e +eL++ Gh_A01G1026 106 RKKLRLTKHQSAILEDSFKEHTTLCPKQKQALAAKLDLRPRQVEVWFQNRRARTKLKQTEVDCELLKKCCETLTEENKRLQEELQELKS 194 69*************************************************************************************84 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.71E-18	101	163	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.131	102	162	IPR001356	Homeobox domain
SMART	SM00389	8.5E-16	104	166	IPR001356	Homeobox domain
Pfam	PF00046	7.1E-17	106	160	IPR001356	Homeobox domain
CDD	cd00086	1.75E-16	106	163	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.8E-18	106	160	IPR009057	Homeodomain-like
PROSITE pattern	PS00027	0	137	160	IPR017970	Homeobox, conserved site
Pfam	PF02183	2.4E-9	162	194	IPR003106	Leucine zipper, homeobox-associated
SMART	SM00340	1.8E-19	162	205	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MGFDDICSSG LGLGLGWNVK RENFSQSDHQ QKKRKSLVRD EHFFPSLTLG PSSDDDARKA 60 HGDDQQASSV TALSSFSNSS VKKEGDVEFD RVSSRVGDED YEGCHRKKLR LTKHQSAILE 120 DSFKEHTTLC PKQKQALAAK LDLRPRQVEV WFQNRRARTK LKQTEVDCEL LKKCCETLTE 180 ENKRLQEELQ ELKSWKLTAS YCMQLPAAAT LTMCPSCERV ANGGHGPPAT TTSIPFTIGP 240 KSHFINSLSH PSAAC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	154	162	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016702359.1	0.0	PREDICTED: homeobox-leucine zipper protein HAT22-like
Swissprot	P46604	2e-71	HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBL	A0A1U8KNS2	0.0	A0A1U8KNS2_GOSHI; homeobox-leucine zipper protein HAT22-like
STRING	Gorai.002G137300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1671	28	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	1e-73	HD-ZIP family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence. Elife, 2017. [PMID:27697148] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239]