PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A01G0971 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | B3 | ||||||||
Protein Properties | Length: 225aa MW: 25681.9 Da PI: 10.446 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 53.7 | 3.7e-17 | 129 | 218 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 f+k +++s+v+ +l lp +f++++ +k ++ +tl de+g ++ + k+ + l++GWk+F+ a+gL +gD +vF+l +r++f +v ++r Gh_A01G0971 129 FIKSMLQSHVTGGFWLGLPVHFCKTNL-PK-RDEVMTLVDEEGHEYPTIY--LAKKTG--LSGGWKGFAVAHGLVDGDAIVFQLLQRTTF--KVYIIR 218 89*********************9884.33.5568***************..555444..9**********************9998888..888776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.53E-24 | 122 | 220 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.8E-20 | 123 | 220 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.25E-26 | 127 | 218 | No hit | No description |
SMART | SM01019 | 1.3E-22 | 129 | 220 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.478 | 129 | 220 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.5E-16 | 129 | 218 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MVVAKEKMMS YEEIRQKRVE ENKKRMEALN LPQLSTLLHT PSFKPSPRKQ MKPRTVEKQL 60 VVVRRSSRVA NKPAPVYQEV LVDKVMIPRR VSKHRDLSNR VYASDEARAE ALEKAEKLES 120 GLDPHFPVFI KSMLQSHVTG GFWLGLPVHF CKTNLPKRDE VMTLVDEEGH EYPTIYLAKK 180 TGLSGGWKGF AVAHGLVDGD AIVFQLLQRT TFKVYIIRVK GSQQS |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 73848012 | 0.0 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016701849.1 | 1e-167 | PREDICTED: B3 domain-containing protein At5g42700-like isoform X1 | ||||
Swissprot | Q9FMZ4 | 3e-79 | Y5270_ARATH; B3 domain-containing protein At5g42700 | ||||
TrEMBL | A0A1U8KMB4 | 1e-165 | A0A1U8KMB4_GOSHI; B3 domain-containing protein At5g42700-like isoform X1 | ||||
STRING | Gorai.002G131600.1 | 1e-163 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3744 | 27 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42700.1 | 6e-75 | B3 family protein |
Publications ? help Back to Top | |||
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