PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A01G0681
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 567aa    MW: 61296.8 Da    PI: 6.7276
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A01G0681genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.91.4e-30222279260
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                  +DgynWrKYGqK+vkg efprsYY+Ct+++C+vkk  ers+ d++++ei+Y+g+H+h+k
  Gh_A01G0681 222 EDGYNWRKYGQKHVKGCEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIIYKGTHDHPK 279
                  7****************************************.***************85 PP
2WRKY106.31.6e-33385443159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  Gh_A01G0681 385 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 443
                  59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182909.81E-24220280IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.7E-25221280IPR003657WRKY domain
SMARTSM007741.5E-32221279IPR003657WRKY domain
PfamPF031061.9E-23222278IPR003657WRKY domain
PROSITE profilePS5081122.01222280IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.4E-37370445IPR003657WRKY domain
SuperFamilySSF1182902.22E-29377445IPR003657WRKY domain
PROSITE profilePS5081138.825380445IPR003657WRKY domain
SMARTSM007743.1E-39385444IPR003657WRKY domain
PfamPF031063.4E-26386443IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MEEQILASSS SSSSSSSAVA AATMQHDLSG SAGSGGARYK LVAPAKLPIS RSACITIPPG  60
LSPSSFLESP VLLSDVKAEP SPTTGSLIKP QAVHASVACS TYSATTACSN AFDERNPSTF  120
EFRPHPRSNM APADLDPQRS EQSRQIQIQY QTISFNSSAS VKSEMAGSSN VLSLSVPVHT  180
ATSMASAHAE VDAEELNQIG NPNGGMPSGQ SDHRGVGPVS SEDGYNWRKY GQKHVKGCEF  240
PRSYYKCTHP NCEVKKLFER SHDGQITEII YKGTHDHPKP QPSRRYSSGN IMSGQEERSD  300
KVSSLNGRDD KSYCGYGQMA HSIEPNSTAD ISPVTANDDN LDEVEDDDPF SKRRKMDGGI  360
DITPVVKPIR EPRVVVQTVS EVDILDDGYR WRKYGQKVVR GNPNPRSYYK CTNAGCPVRK  420
HVERASHDPK AVITTYEGKH NHDVPTAKTG SHDTAGPVAM CGPSRVRSEE NDAISLDLGV  480
GISSVPEHAS NEQQQLDSEL VQSRPQAGGS SFKFVQPTMM AYYGALNGSM NQYVSRENPS  540
EGRGVEITPL NHSYAFPQSM GRILTGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-37222445877Probable WRKY transcription factor 4
2lex_A5e-37222445877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6697610.0KF669761.1 Gossypium hirsutum WRKY transcription factor 17 (WRKY17) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017642893.10.0PREDICTED: probable WRKY transcription factor 20
SwissprotQ93WV00.0WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A0B0P2Y20.0A0A0B0P2Y2_GOSAR; Putative WRKY transcription factor 20-like protein
TrEMBLA0A1U8KJF30.0A0A1U8KJF3_GOSHI; probable WRKY transcription factor 20
STRINGGorai.002G096200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31332867
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.20.0WRKY family protein