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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A01G0515 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | B3 | ||||||||
Protein Properties | Length: 385aa MW: 42611.4 Da PI: 7.1055 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 51.8 | 1.5e-16 | 226 | 323 | 1 | 95 |
EEEE-..-HHHHT.T-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE.. CS B3 1 ffkvltpsdvlks.grlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefel 92 f+k+lt sdv ++ grlvlpk++ae++ +++ ++++ lt++d++g+ Wev ++y + ++++yvl+ G k++ + ++gD+v+F+ +r ++++l Gh_A01G0515 226 FEKKLTASDVDTRnGRLVLPKRCAEAYfpKISGQQGIFLTVQDTKGNDWEVFYRYwsNTNGKMYVLE-GLKDYMIMMEWEAGDTVTFY--KReEDEKL 320 99********98879*************9555558999*****************544444458888.********************..44366655 PP EEE CS B3 93 vvk 95 +++ Gh_A01G0515 321 FMG 323 554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.8E-25 | 219 | 331 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.88E-18 | 223 | 324 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.53E-20 | 224 | 326 | No hit | No description |
SMART | SM01019 | 9.9E-13 | 226 | 327 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.8E-13 | 226 | 323 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.263 | 227 | 328 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 385 aa Download sequence Send to blast |
MAAPTVFIGT CFHCQSQSDV FFSGWQLRDG SFALLCHPCG SAFVEGRFCE TFHPEASGWR 60 ECDSCNKGIH CGCIMAAHSY AILDFGGVKC LECCLNEALA LHRNSPTFSN PEEMQASDSH 120 PKASDDTEET VTGVDPIASP DSVALNASPD KIGTPTSGAV PAAETEGESS VNSPAGTKKS 180 CKKKGRKNRK DASKQHQIQA RYSPKTSPEE LREICRQAKS SLIPLFEKKL TASDVDTRNG 240 RLVLPKRCAE AYFPKISGQQ GIFLTVQDTK GNDWEVFYRY WSNTNGKMYV LEGLKDYMIM 300 MEWEAGDTVT FYKREEDEKL FMGFKKYQAP ESAQKASSLN LVLFIKGVGS SFLYMLSSVS 360 ELLLSRKMQV IGMNDKKTKA YILSE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 3e-34 | 203 | 326 | 1 | 123 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016733512.1 | 0.0 | PREDICTED: B3 domain-containing protein Os07g0563300-like | ||||
TrEMBL | A0A1U8N339 | 0.0 | A0A1U8N339_GOSHI; B3 domain-containing protein Os07g0563300-like | ||||
STRING | Gorai.002G075900.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM18111 | 7 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32010.1 | 6e-35 | HSI2-like 1 |