PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A01G0196 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C3H | ||||||||
Protein Properties | Length: 470aa MW: 49754.4 Da PI: 6.6262 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 37 | 5.6e-12 | 43 | 68 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C +++rtG+C yG++C+F+H++ Gh_A01G0196 43 DEADCIYYLRTGFCGYGSKCRFNHPR 68 6799********************96 PP | |||||||
2 | zf-CCCH | 38.5 | 2e-12 | 90 | 114 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtG Ck+G++Ck++H++ Gh_A01G0196 90 QPVCQYYMRTGACKFGASCKYHHPK 114 689********************96 PP | |||||||
3 | zf-CCCH | 33.4 | 7.4e-11 | 135 | 159 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C+++ +tG+Ck+G +CkF+H+ Gh_A01G0196 135 GEKECSYYVKTGQCKFGTTCKFHHP 159 7899********************8 PP | |||||||
4 | zf-CCCH | 39.2 | 1.2e-12 | 293 | 319 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tG CkyG++C+++H+p Gh_A01G0196 293 PGQPECQYYMKTGRCKYGSSCRYHHPP 319 5789*********************97 PP | |||||||
5 | zf-CCCH | 27.5 | 5.2e-09 | 342 | 365 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C ++ + G Ck+G+ C+F H++ Gh_A01G0196 342 PTCTHYTQRGMCKFGAACRFDHPM 365 78********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 7.4E-5 | 41 | 68 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.324 | 41 | 69 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.8E-9 | 43 | 68 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-6 | 44 | 70 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.6E-5 | 47 | 68 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.61 | 87 | 115 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.8E-7 | 87 | 114 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.2E-10 | 90 | 114 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.36E-6 | 90 | 114 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.6E-5 | 92 | 113 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.521 | 133 | 161 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.5E-5 | 133 | 160 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.06E-6 | 135 | 161 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.9E-8 | 135 | 159 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.7E-4 | 139 | 158 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 17.131 | 292 | 320 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.0E-7 | 292 | 319 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.8E-10 | 294 | 319 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.49E-6 | 296 | 320 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.1E-5 | 298 | 319 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.7E-5 | 338 | 365 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.892 | 338 | 366 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-5 | 342 | 365 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-5 | 342 | 368 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.7E-4 | 344 | 363 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 470 aa Download sequence Send to blast |
MERDPESDPQ PEWNTQGPET GLEEPVCRLG LEGGSESYPE RPDEADCIYY LRTGFCGYGS 60 KCRFNHPRDR AGVMGAGRGG VGEYPERAGQ PVCQYYMRTG ACKFGASCKY HHPKQGGGSV 120 SSVPLNYYGY PLRPGEKECS YYVKTGQCKF GTTCKFHHPA PPAMQVPAPA PAPQVAPAPT 180 PMPAPTMYST VQSPSGPSSQ QYGVVMARPP LMPGSYVQGP YGPLLLSQGV PSWNPYPGPV 240 GYGTQPTVPS SSTFGATPLS PSATAYTGSH QFVPSSFEPS SNIQEEVSFP ERPGQPECQY 300 YMKTGRCKYG SSCRYHHPPE VFAPKADVIL SPLGLPLRPG APTCTHYTQR GMCKFGAACR 360 FDHPMGTLSY SPSASSLADM PVAPYPVGTT IGTLAPSSSS SELRPELLSG SSKDPAPAIM 420 SSSVSASSEP VGSVFSEGAP VPHSTTQQSS WSSAPSTGGG SDDDEPHTSS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.7709 | 0.0 | boll| ovule |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012453008.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 34-like | ||||
Swissprot | Q6NPN3 | 1e-150 | C3H58_ARATH; Zinc finger CCCH domain-containing protein 58 | ||||
TrEMBL | A0A0B0MC14 | 0.0 | A0A0B0MC14_GOSAR; Uncharacterized protein | ||||
STRING | Gorai.002G027000.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1779 | 27 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06410.1 | 1e-128 | C3H family protein |
Publications ? help Back to Top | |||
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