PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Genemark1.8765_g

Common Name

COCSUDRAFT_60449

Organism

Coccomyxa subellipsoidea C-169

Taxonomic ID

574566

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea

Family

C3H

Protein Properties

Length: 486aa MW: 51475 Da PI: 5.4233

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Genemark1.8765_g	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.4	3.9e-06	40	56	10	26
GGTS--TTTTT-SS-SS CS zf-CCCH 10 artGtCkyGdrCkFaHg 26 ++ C++Gd+C++aH Genemark1.8765_g 40 MKARKCPRGDSCPYAHN 56 78899***********6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	0.54	34	57	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	13	66	89	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 486 aa Download sequence Send to blast
MAEQTDTLME APQAAATCNS AAAEEEPELF KADDFRIYCM KARKCPRGDS CPYAHNVFEY 60 WLHPSRYRTQ LCKDGAACAR RICFFAHSPL ELRADAPKPH VSPEALASAT AAAALEAARS 120 NAPAGEADQA EVNLLSKLLK AHGGSDRPAL EHLQAQAAGG HFAQDQQQQL VDALATLLLS 180 NGFLQQELPE AQSQPPPAFD DRLELSAMGK FHSVPMYAQS RHHPGSMRAP RRHRSVDLVS 240 SLAAVAAPVA FTNDNIIPES YNFLAGAAAD RPPRYSRREE AAYNAGVVAA IQQQPQQQQW 300 GVGDAAEFMQ SLQQAARAQA AAAAEAESAA AAKLHPCAAF PGGAFGASPF LSSPFAADSF 360 APTQPAMGAT AEPGWTYEAE GMDLSGSNAF GFNTGRLSND STRFSFDTFS PTGGRRRSRS 420 EGLPTDFRCS EDSMGSSVDC APPASNWSNF ASGAAATQAP FVNYQLSSLF ASSAPFDAAA 480 ATRGF*

Sequence ? help Back to Top

Protein Sequence Length: 486 aa Download sequence Send to blast

MAEQTDTLME APQAAATCNS AAAEEEPELF KADDFRIYCM KARKCPRGDS CPYAHNVFEY  60
WLHPSRYRTQ LCKDGAACAR RICFFAHSPL ELRADAPKPH VSPEALASAT AAAALEAARS  120
NAPAGEADQA EVNLLSKLLK AHGGSDRPAL EHLQAQAAGG HFAQDQQQQL VDALATLLLS  180
NGFLQQELPE AQSQPPPAFD DRLELSAMGK FHSVPMYAQS RHHPGSMRAP RRHRSVDLVS  240
SLAAVAAPVA FTNDNIIPES YNFLAGAAAD RPPRYSRREE AAYNAGVVAA IQQQPQQQQW  300
GVGDAAEFMQ SLQQAARAQA AAAAEAESAA AAKLHPCAAF PGGAFGASPF LSSPFAADSF  360
APTQPAMGAT AEPGWTYEAE GMDLSGSNAF GFNTGRLSND STRFSFDTFS PTGGRRRSRS  420
EGLPTDFRCS EDSMGSSVDC APPASNWSNF ASGAAATQAP FVNYQLSSLF ASSAPFDAAA  480
ATRGF*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005642797.1	0.0	hypothetical protein COCSUDRAFT_60449
TrEMBL	I0YIN4	0.0	I0YIN4_COCSC; Uncharacterized protein
STRING	XP_005642797.1	0.0	(Coccomyxa subellipsoidea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	1e-20	CCCH-type zinc finger protein with ARM repeat domain

Link Out ? help Back to Top
Entrez Gene	17036160

Publications ? help Back to Top
Blanc G, et al. The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation. Genome Biol., 2012. 13(5): p. R39 [PMID:22630137]