PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Genemark1.6211_g

Common Name

COCSUDRAFT_57182

Organism

Coccomyxa subellipsoidea C-169

Taxonomic ID

574566

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea

Family

C2H2

Protein Properties

Length: 221aa MW: 24939.7 Da PI: 8.9432

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Genemark1.6211_g	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.1	0.00028	22	45	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+ C+++Fs+ + +rH + H Genemark1.6211_g 22 FVCSLCKERFSSEEAWERHYDRkH 45 89*****************99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	8.663	22	51	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	24	46	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016021	Cellular Component	integral component of membrane
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
MCFTRHLQRE QAKVRRPSGN RFVCSLCKER FSSEEAWERH YDRKHHIHIH PGRDVCLADY 60 CEVLHCDKIN LTPTSRQLRA QQAGDPTLAP HAPCRESAAE QLRESCRDLA AACFPPDAGP 120 AAAKLHRLFV EGVCAAHTCD LELQQDLLVQ LAASEKGTLG YKLLIGLALG AMAIFYACLW 180 VYHQYRSGSL SRGDVRRLRR KKANNILEFL GLQQRKAHRV *

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005645823.1	1e-162	hypothetical protein COCSUDRAFT_57182
TrEMBL	I0YSB0	1e-161	I0YSB0_COCSC; Uncharacterized protein
STRING	XP_005645823.1	1e-162	(Coccomyxa subellipsoidea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63280.1	9e-16	C2H2-like zinc finger protein

Link Out ? help Back to Top
Entrez Gene	17039261

Publications ? help Back to Top
Blanc G, et al. The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation. Genome Biol., 2012. 13(5): p. R39 [PMID:22630137]