PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Genemark1.3253_g

Common Name

COCSUDRAFT_62470

Organism

Coccomyxa subellipsoidea C-169

Taxonomic ID

574566

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea

Family

MYB_related

Protein Properties

Length: 519aa MW: 55002.8 Da PI: 9.5419

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Genemark1.3253_g	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32.4	2.2e-10	261	302	2	45
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rW++e+ el+++a +++G++ +++I r+++ gR +k +k+++q Genemark1.3253_g 261 ERWSAEDTELFYKALRLFGTD-FTLIERMFP-GRQRKALKNKLQ 302 59*****************.*****.********99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF15963	1.5E-21	253	337	No hit	No description
SuperFamily	SSF46689	4.56E-8	255	302	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.3E-5	258	301	IPR009057	Homeodomain-like
SMART	SM00717	1.5E-6	259	307	IPR001005	SANT/Myb domain
CDD	cd00167	2.22E-5	262	300	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 519 aa Download sequence Send to blast
MLRGRGLPLR HFQQQKLCQP QQKPQGLLHP VPLRQMFLAH PRNPQQLHSD GSLWAMTFLA 60 HWGQSPLLLG KPKGKQAAAP EEEAGPSSPA AAERSSRAVP AAVGVEDRTL VILPDQQRQD 120 ADGEAAAPAG KGRKGRARKA VAATAPLDVS TMSLKSIIKC AYAKERARLD EEKRKKEEEE 180 KLTQEAGGSQ VPVAAAAPVA ASPQPSAAGL APRVEVVDGR MRIVEQSLSI QAQPEAAGRL 240 ITVEDNPKLN NLTYARRMNN ERWSAEDTEL FYKALRLFGT DFTLIERMFP GRQRKALKNK 300 LQREYRADFA RVDSALSGGG AASQESLKEV VALLKQHTED QENTGVVDGS GEEQRPDLTA 360 ALLGRSQADD AEAAEADAGA ENDDVLALPA PPVQNGGTQR ARTKASQRRP KQPATETHPE 420 ASAAPGEPAS AAAEVAIAAP PVAPQVADGD GPASAPPRRK VLPRVPARGR KRPEASAPAA 480 GDGSNGEEAV AADGSAVIHE ARPRLTRQRA AAGASSVE*

Sequence ? help Back to Top

Protein Sequence Length: 519 aa Download sequence Send to blast

MLRGRGLPLR HFQQQKLCQP QQKPQGLLHP VPLRQMFLAH PRNPQQLHSD GSLWAMTFLA  60
HWGQSPLLLG KPKGKQAAAP EEEAGPSSPA AAERSSRAVP AAVGVEDRTL VILPDQQRQD  120
ADGEAAAPAG KGRKGRARKA VAATAPLDVS TMSLKSIIKC AYAKERARLD EEKRKKEEEE  180
KLTQEAGGSQ VPVAAAAPVA ASPQPSAAGL APRVEVVDGR MRIVEQSLSI QAQPEAAGRL  240
ITVEDNPKLN NLTYARRMNN ERWSAEDTEL FYKALRLFGT DFTLIERMFP GRQRKALKNK  300
LQREYRADFA RVDSALSGGG AASQESLKEV VALLKQHTED QENTGVVDGS GEEQRPDLTA  360
ALLGRSQADD AEAAEADAGA ENDDVLALPA PPVQNGGTQR ARTKASQRRP KQPATETHPE  420
ASAAPGEPAS AAAEVAIAAP PVAPQVADGD GPASAPPRRK VLPRVPARGR KRPEASAPAA  480
GDGSNGEEAV AADGSAVIHE ARPRLTRQRA AAGASSVE*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	163	175	KERARLDEEKRKK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005648486.1	0.0	hypothetical protein COCSUDRAFT_62470
TrEMBL	I0YZX3	0.0	I0YZX3_COCSC; Uncharacterized protein
STRING	XP_005648486.1	0.0	(Coccomyxa subellipsoidea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP3770	9	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39160.2	6e-12	MYB_related family protein

Link Out ? help Back to Top
Entrez Gene	17041940

Publications ? help Back to Top
Blanc G, et al. The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation. Genome Biol., 2012. 13(5): p. R39 [PMID:22630137]