PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Genemark1.2857_g
Common NameCOCSUDRAFT_62074
Organism
Coccomyxa subellipsoidea C-169
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
Family AP2
Protein Properties Length: 1198aa    MW: 126001 Da    PI: 8.8091
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Genemark1.2857_ggenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.35e-15156207154
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                       s+y+GV++dkk+ +W+++I++ +    +  +s+g+++t+e Aa+a+++a+  l 
  Genemark1.2857_g 156 SRYRGVSYDKKKRKWRVQIKVATL--GKSGVSVGYYDTEEAAARAYDRAAIGLL 207
                       79*******************322..35*********************98766 PP
2AP224.66.3e-08262311155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s++ GV    ++++W A+I +       k  +lg++ t+eeAa+ +++   +l+g
  Genemark1.2857_g 262 SRFMGVGSSNRKNQWQARILVH-----GKVTHLGYYETEEEAARVYDRVSISLHG 311
                       678899767789*********4.....4********************9999998 PP
3AP223.31.7e-07352393149
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaa 49 
                       s+y+GV+  kk+g+W+A +++      rk  + + f+++eeAa+a++ a
  Genemark1.2857_g 352 SQYRGVS--KKKGKWEAKVMVN-----RKWAYRELFDSEEEAARAYDDA 393
                       78****8..557******9993.....599999**************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.48E-11156219IPR016177DNA-binding domain
PfamPF008472.8E-10156204IPR001471AP2/ERF domain
SMARTSM003801.3E-6157225IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.8E-11157220IPR001471AP2/ERF domain
PROSITE profilePS5103214.526157219IPR001471AP2/ERF domain
SMARTSM003806.8E-5263325IPR001471AP2/ERF domain
PROSITE profilePS5103212.102263319IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-11263320IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-8264320IPR001471AP2/ERF domain
CDDcd000182.29E-10352410No hitNo description
SuperFamilySSF541712.09E-7352408IPR016177DNA-binding domain
SMARTSM003806.2E-5353415IPR001471AP2/ERF domain
PROSITE profilePS5103212.286353409IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.0E-8353410IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1198 aa     Download sequence    Send to blast
MQGADNDSDL LQNSALFGGS VLHGEPVSLQ KPEGHGFGGS GPSFPGDSGM GERLGASGSM  60
QMKNDPAAAM PPIQLPPGFP NWPSPSNGAG GQQLNGMGNG QPSAAGMHGA GNSMPNGGHA  120
GPSHVRHHSD ASSSGAGAAA GTMPMVRQGT GGPNKSRYRG VSYDKKKRKW RVQIKVATLG  180
KSGVSVGYYD TEEAAARAYD RAAIGLLGRN HSAITTNFPL HEYDKEPVPQ LIGKTREEVK  240
ATLKSERAKV PRRRFSSRQR TSRFMGVGSS NRKNQWQARI LVHGKVTHLG YYETEEEAAR  300
VYDRVSISLH GPHAQTNYPA AEYEGQDCGE FQGLAREELQ RALGVKPMDK SSQYRGVSKK  360
KGKWEAKVMV NRKWAYRELF DSEEEAARAY DDAVWRLKPK EAKSYINFKE RYSAERMRTA  420
GKPRPSRQLL QRGSQHSSDS PQGAASSPSG SLVSADGGPG NGNGASAFGR SLPPLSPASA  480
GEAGIARVSS GRTLRASDLV RTNSSASSEE PAMMRRHSSS TGGLPSSLMQ GFGSTRPPSP  540
GSSEEALFRG HLMGVPLPGQ GGRAGSPVSS TDDGLARRKG LPGLLPPQGQ DSATSKNSLP  600
KSASTSHLGG LNQMPPGPMN MGYFPDGSFI PLGPTGEGQP SGYKPSQMPS GLRMLRTMST  660
PHIAVSQGAP MQPGMAPYSM YSMDNSGGQG QYMMGAPPQY VTSSMPYGAM HGGYEGPQGA  720
MRMRHSASAV ELPRSGGMQA GGGSFQQQQQ PFPMYGLGAP MAPLTDLQHL SSPRASQSAG  780
QLASGGMMVR VGSEQHLISD QPQQHMGRNP SDTPYPGQSG SPSHRPYSPS PGSMPSPLIG  840
GLNGSLGLRS QSGLSVGEAG TPRRSGLPPH PPSPAASPSH HSRAQLPPHS GPHQQPPSDM  900
QACMHLMNLR NSPDLPWERW ADWACGTQVD ALDEKPFSMD TLQQQAQDQS QSGQQQMPAL  960
PQNAPLTFTM VMPGSMAAQD EGMGGMPRSL SMSQLPMQYR SPGLIQFSGG MTVPGSIPAP  1020
QWMGAGQEMG QEGAAGTAAA WRCDYSLPSG QLTGMGQRSA SASNLAAMNL PQGDWCGSQD  1080
QLQNGASLVK SASVSSLGHL CKQYRAQPFT ATLPTLHADK PTDGMGADPS PNTLDANSSL  1140
LDDLAGSAMV TDGNGMEGCP SPLRAVQIGG EDLTMFDHTG EGDGTDFLLD PDLTPDD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005649189.10.0hypothetical protein COCSUDRAFT_62074
TrEMBLI0Z1X60.0I0Z1X6_COCSC; Uncharacterized protein
STRINGXP_005649189.10.0(Coccomyxa subellipsoidea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP624466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.32e-15related to AP2.7
Publications ? help Back to Top
  1. Blanc G, et al.
    The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation.
    Genome Biol., 2012. 13(5): p. R39
    [PMID:22630137]